Research Results - Associated research group

Research Results - Associated research group (FY2016 to 2017)

*Corresponding author, #These authors contributed equally to this work.
Underlines denote the study representative, and dotted underlines denote research team members

　
Arimura group Chiba group Endo group Fujii group
Kawasaki group Kiba group Kimura group Matsushita group
Notaguchi group Saijo group Seki group Shimizu group
Suzaki group Takahashi group Takano group Takezawa group
Tamada group Toyota group Uchida group Yamaguchi group

Arimura group

  • -2018-
    Original papers
    Sukegawa, S., Shiojiri, K., Higami, T., Suzuki, S., and *Arimura, G. (2018) Pest management using mint volatiles to elicit resistance in soy: mechanism and application potential. Plant J., 96, 910-920.
    https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.14077
    Nakayasu, M., Shioya, N., Shikata, M., Thagun, C., Abdelkareem, A., Okabe, Y., Ariizumi, T., Arimura, G., Mizutani, M., Ezura, H., Hashimoto, T., and *Shoji, T. (2018) JRE4 is a master transcriptional regulator of defense-related steroidal glycoalkaloids in tomato. Plant J., 94, 975-990.
    https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.13911
    Uemura, T., Yashiro, T., Oda, R., Shioya, N., Nakajima, T., Hachisu, M., Kobayashi, S., Nishiyama, C., and *Arimura, G. (2018) Intestinal anti-inflammatory activity of perillaldehyde. J. Agri. Food Chem., 66, 3443-3448.
    https://pubs.acs.org/doi/10.1021/acs.jafc.8b00353
  • -2017-
    Original papers
    Nemoto, K., Ramadan, A., Arimura, G., Imai, K., Tomii, K., Shinozaki, K., and *Sawasaki, T. (2017) Tyrosine phosphorylation of the GARU E3 ubiquitin ligase promotes gibberellin signalling by preventing GID1 degradation. Nature Commun., 8, 1004 (15 pages).
    https://www.nature.com/articles/s41467-017-01005-5
    Ozawa, R., Endo, H., Iijima, M., Sugimoto, K., Takabayashi, J., Gotoh, T., and *Arimura, G. (2017) Intraspecific variation among Tetranychid mites for ability to detoxify and to induce plant defenses. Sci. Rep., 7, 43200 (11 pages).
    https://www.nature.com/articles/srep43200
    Review papers
    *Yazaki, K., Arimura, G., and Ohnishi, T. (2017) 'Hidden' terpenoids in plants: their biosynthesis, localization and ecological roles. Plant Cell Physiol., 58, 1615-1621.
    https://academic.oup.com/pcp/article/58/10/1615/4096626
    Books
    Arimura, G. and Pearse, I. (2017) From the lab bench to the forest: ecology and defence mechanisms of volatile-mediated "talking trees." In "Advances in Botanical Research vol. 82. Communication between Plants, and between Plants and Other Organisms" edited by Becard, G. Elsevier, 3-17.
    https://doi.org/10.1016/bs.abr.2016.08.001
  • -2016-
    Books
    Arimura, G. and Maffei, M. E. (2016) Plant specialized metabolism: genomics, biochemistry, and biological functions. CRC Press, Boca Raton, FL, USA, 376.
    Arimura, G. and Maffei, M. E. (2016) Introduction to plant specialized metabolism. In "Plant Specialized Metabolism: Genomics, Biochemistry, and Biological Functions" edited by Arimrua, G. and Maffei, M. E. CRC Press, 1-7.
    Arimura, G., Matsui, K., Koeduka, T., and Holopainen, J. K. (2016) Biosynthesis and regulation of plant volatiles, and their functional roles in ecosystem interactions and global environmental changes. In "Plant Specialized Metabolism: Genomics, Biochemistry, and Biological Functions" edited by Arimrua, G. and Maffei, M. E. CRC Press, 185-237.

Chiba group

  • -2019-
    Original papers
    #Motomura, K., #Arae, T., Uramoto, H. A., Suzuki, Y., Takeuchi, H., Suzuki, T., Ichihashi, Y., Shibata, A., Shirasu, K., Takeda, A., Higashiyama, T., and *Chiba, Y. (2019) AtNOT1 is a novel regulator of gene expression during pollen development. Plant Cell Physiol., in press.
    https://doi.org/10.1093/pcp/pcz235
    Arae, T., Morita, K., Imahori, R., *Suzuki, Y., *Yasuda, S., Sato, T., Yamaguchi, J., and *Chiba, Y. (2019) Identification of Arabidopsis CCR4-NOT complexes with Pumilio RNA binding proteins, APUM5 and APUM2. Plant Cell Physiol., 60, 2015-2025.
    https://doi.org/10.1093/pcp/pcz089

Fujii group

  • -2016-
    Original papers
    #Yasuda, S., #Wada, Y., #Kakizaki, T., Tarutani, Y., Miura-Uno, E., Murase, K., Fujii, S., Hioki, T., Shimoda, T., Takada, Y., Shiba, H., Takasaki-Yasuda, T., Suzuki, G., *Watanabe, M., and *Takayama, S. (2016) A complex dominance hierarchy is controlled by polymorphism of small RNAs and their targets. Nature Plants, 3, 16206.
    https://www.nature.com/articles/nplants2016206
    Kubo, K., Tsukahara, M., Fujii, S., Murase, K., Wada, Y., Entani, T., Iwano, M., and *Takayama, S. (2016) Cullin1-P is an essential component of non-self recognition system in self-incompatibility in Petunia. Plant Cell Physiol., 57, 2403-2416.
    http://pcp.oxfordjournals.org/content/early/2016/08/26/pcp.pcw152.long
    *Fujii, S., Suzuki, T., Giegé, P., Higashiyama, T., Koizuka, N., and Shikanai, T. (2016) The Restorer-of-fertility-like 2 pentatricopeptide repeat protein and RNase P are required for the processing of mitochondrial orf291 RNA in Arabidopsis. Plant J., 86, 504-513.
    https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.13185
    Review papers
    Fujii, S., Kubo, K., and *Takayama, S. (2016) Non-self- and self-recognition models in plant self-incompatibility. Nature Plants, 2, 16130.
    http://www.nature.com/articles/nplants2016130

Kawasaki group

  • -2019-
    Original papers
    Yamaguchi, K., Mine, A., Desaki, Y., Fujio, K., Takeda, A., and *Kawasaki, T. (2019) Variable dependencies of PBL27 and MAPKKK5 in chitin-induced MAPK activation in Arabidopsis: Types of chitin and plant growth conditions matter. Plant Cell, Supplemental comment (4 pages).
    http://bit.ly/31XKE3S
  • -2018-
    Original papers
    *Yamaguchi, K., Yoshimura, Y., Nakagawa, S., Mezaki, H., Yoshimura, S., and *Kawasaki, T. (2018) OsDRE2 contributes to chitin-triggered response through its interaction with OsRLCK185. Biosci. Biotechnol. Biochem., 83, 281-290.
    https://doi.org/10.1080/09168451.2018.1543012
  • -2016-
    Original papers
    #Yamada, K., #Yamaguchi, K., Shirakawa, T., Nakagami, H., Mine, A., Ishikawa, K., Fujiwara, M., Narusaka, M., Narusaka, Y., Ichimura, K., Kobayashi, Y., Matsui, H., Nomura, Y., Nomoto, M., Tada, Y., Fukao, Y., Fukamizo, T., Tsuda, K., Shirasu, K., Shibuya, N., and *Kawasaki, T. (2016) The Arabidopsis CERK1-associated kinase PBL27 connects chitin perception to MAPK activation. EMBO J., 35, 2468-2483.
    http://emboj.embopress.org/content/35/22/2468

Kiba group

  • -2019-
    Original papers
    Yoshida, S., Kim, S., Wafula, E. K., Tanskanen, J., Kim, Y. M., Honaas, L., Yang, Z., Spallek, T., Conn, C. E., Ichihashi, Y., Cheong, K., Cui, S., Der, J. P., Gundlach, H., Jiao, Y., Hori, C., Ishida, J. K., Kasahara, H., Kiba, T., Kim, M. S., Koo, N., Laohavisit, A., Lee, Y. H., Lumba, S., McCourt, P., Mortimer, J. C., Mutuku, J. M., Nomura, T., Sekimoto, Y. S., Seto, Y., Wang, Y., Wakatake, T., Sakakibara, H., Demura, T., Yamaguchi, S., Yoneyama, K., Manabe, R., Nelson, D. C., Schulman, A. H., Timko, M. P., dePamphilis, C. W., Choi, D., and *Shirasu, K. (2019) Genome sequence of Striga asiatica provides insight into the evolution of plant parasitism. Curr. Biol., 29, 3041-3052.
    https://doi.org/10.1016/j.cub.2019.07.086
    *Kiba, T., Takebayashi, Y., Kojima, M., and *Sakakibara, H. (2019) Sugar-induced de novo cytokinin biosynthesis contributes to Arabidopsis growth under elevated CO2. Sci. Rep., 9, 7765 (15 pages).
    https://www.nature.com/articles/s41598-019-44185-4
    *Toda, E., Koiso, N., Takebayashi, A., Ichikawa, M., Kiba, T., Osakabe, K., Osakabe, Y., Sakakibara, H., Kato, N., and *Okamoto, T. (2019) An efficient DNA- and selectable-marker-free genome-editing system using zygotes in rice. Nature Plants, 5, 363–368.
    https://www.nature.com/articles/s41477-019-0386-z
  • -2018-
    Original papers
    Yamaguchi, N., Huang, J., Tatsumi, Y., Abe, M., Sugano, S. S., Kojima, M., Takebayashi, Y., Kiba, T., Yokoyama, R., Nishitani, K., Sakakibara, H., and *Ito, T. (2018) Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy. Nature Commun., 9, 5290 (15 pages).
    https://www.nature.com/articles/s41467-018-07763-0
    Xu, Y., Prunet, N., Gan, E.-S., Wang, Y., Stewart, D., Wellmer, F., Huang, J., Yamaguchi, N., Tatsumi, Y., Kojima, M., Kiba, T., Sakakibara, H., Jack, T. P., Meyerowitz, E. M., and *Ito, T. (2018) SUPERMAN regulates floral whorl boundaries through control of auxin biosynthesis. EMBO J., 37, e97499 (14 pages).
    https://www.embopress.org/doi/10.15252/embj.201797499
    *Kiba, T., Inaba, J., Kudo, T., Ueda, N., Konishi, M., Mitsuda, N, Takiguchi, Y., Kondou, Y., Yoshizumi, T., Ohme-Takagi, M., Matsui, M., Yano, K., Yanagisawa, S., and Sakakibara, H. (2018) Repression of nitrogen-starvation responses by members of the Arabidopsis GARP-type transcription factor NIGT1/HRS1 subfamily. Plant Cell, 30, 925-945.
    http://www.plantcell.org/content/30/4/925
    #Maeda, Y., #Konishi, M., Kiba, T., Sakuraba, Y., Sawaki, N., Kurai, T., Ueda, Y., Sakakibara, H., and *Yanagisawa, S. (2018) A NIGT1-centred transcriptional cascade regulates nitrate signalling and incorporates phosphorus starvation signals in Arabidopsis. Nature Commun., 9, 1376 (14 pages).
    https://www.nature.com/articles/s41467-018-03832-6
    Review papers
    *Kiba, T. (2018) International symposium on long-distance signaling in plants. Plant Cell Physiol., 59, 1697-1699.
    https://academic.oup.com/pcp/article/59/9/1697/5060944
  • -2017-
    Original papers
    Pudasaini, A., Shim, J. S., Song, Y. H., Shi, H., Kiba, T., Somers, D. E., Imaizumi, T., and *Zoltowski, B. D. (2017) Kinetics of the LOV domain of ZEITLUPE determine its circadian function in Arabidopsis. eLIFE, 6, e21646 (27 pages).
    https://elifesciences.org/articles/21646
    Osugi, A., Kojima, M., Takebayashi, Y., Ueda, N., Kiba, T., and *Sakakibara, H. (2017) Systemic transport of trans-zeatin and its precursor have differing roles in Arabidopsis shoots. Nature Plants, 3 , 17112.
    https://www.nature.com/articles/nplants2017112
    #Spallek, T., #Melnyk, C. W., Wakatake, T., Zhang, J., Sakamoto, Y., Kiba, T., Yoshida, S., Matsunaga, S., Sakakibara, H., and *Shirasu, K. (2017) Inter-species hormonal control of host root morphology by parasitic plants. Proc. Natl. Acad. Sci. U.S.A., 114, 5283-5288.
    http://www.pnas.org/content/114/20/5283
  • -2016-
    Original papers
    *Kiba, T. and Henriques, R. (2016) Assessing protein stability under different light and circadian conditions. Methods Mol. Biol., 1398, 141-152.
    https://link.springer.com/protocol/10.1007%2F978-1-4939-3356-3_13
    *Nakamichi, N., Takao, S., Kudo, T., Kiba, T., Wang, Y., Kinoshita, T., and Sakakibara, H. (2016) Improvement of Arabidopsis biomass and cold, drought, and salinity stress tolerance by modified circadian clock-associated PSEUDO-RESPONSE REGULATORs. Plant Cell Physiol., 57, 1085-1097.
    http://pcp.oxfordjournals.org/content/57/5/1085
    Review papers
    *Kiba, T. and *Krapp, A. (2016) Plant nitrogen acquisition under low availability: regulation of uptake and root architecture. Plant Cell Physiol., 57, 707-714.
    https://academic.oup.com/pcp/article/57/4/707/2461115

Kimura group

  • -2018-
    Original papers
    Yoshiyama, K. O. and *Kimura, S. (2018) Ser-Gln sites of SOG1 are rapidly hyperphosphorylated in response to DNA double-strand breaks. Plant Signal. Behav., e1477904.
    https://www.tandfonline.com/doi/full/10.1080/15592324.2018.1477904
    Nakayama, H., Sakamoto, T., Okegawa, Y., Kaminoyama, K., Fujie, M., Ichihashi, Y., Kurata, T., Motohashi, K., Al-Shehbaz, I., Sinha, N., and *Kimura, S. (2018) Comparative transcriptomics with self-organizing map reveals cryptic photosynthetic differences between two accessions in North American Lake cress. Sci. Rep., 8, 3302.
    https://www.nature.com/articles/s41598-018-21646-w
    #Uchida, N., #Takahashi, K., Iwasaki, R., Yamada, R., Yoshimura, M., Endo, T. A., Kimura, S., Zhang, H., Nomoto, M., Tada, Y., Kinoshita, T., Itami, K., *Hagihara, S., and *Torii, K. U. (2018) Chemical hijacking of auxin signaling with an engineered auxin-TIR1 pair. Nature Chem. Biol., 14, 299-305.
    https://www.nature.com/articles/nchembio.2555
    Review papers
    *Sakamoto, T. and *Kimura, S. (2018) Plant temperature sensors. Sensors, 18 , 4365 (11 pages).
    https://www.mdpi.com/1424-8220/18/12/4365/htm
  • -2017-
    Original papers
    Yoshiyama, K. O., Kaminoyama, K., Sakamoto, T., and *Kimura, S. (2017) Increased phosphorylation of Ser-Gln sites on SUPPRESSOR OF GAMMA RESPONSE1 strengthens the DNA damage response in Arabidopsis thaliana. Plant Cell, 29, 3255-3268.
    http://www.plantcell.org/content/29/12/3255
    *Nakamasu, A., Suematsu, N. J., and Kimura, S. (2017) Asymmetries in leaf branch are associated with differential speeds along growth axes: A theoretical prediction. Dev. Dyn., 246, 981-991.
    http://onlinelibrary.wiley.com/doi/10.1002/dvdy.24587/full
    Kawakatsu, Y., Nakayama, H., Kaminoyama, K., Igarashi, K., Yasugi, M., Kudoh, H., Nagano, A. J, Yano, K., Kubo, N., and Kimura, S. (2017) A GLABRA1 ortholog on LG A9 controls trichome number in the Japanese leafy vegetables Mizuna and Mibuna (Brassica rapa L. subsp. nipposinica L. H. Bailey): evidence from QTL analysis. J. Plant Res., 130, 539-550.
    https://link.springer.com/article/10.1007%2Fs10265-017-0917-5
    Review papers
    Nakayama, H., Sinha, N. R., and *Kimura, S. (2017) How do plants and phytohormones accomplish heterophylly, leaf phenotypic plasticity, in response to environmental cues. Front. Plant Sci., 8, 1717 (7 pages).
    https://www.frontiersin.org/articles/10.3389/fpls.2017.01717/full

Matsushita group

  • -2017-
    Original papers
    #Ushijima, T., #Hanada, K., Gotoh, E., Yamori, W., Kodama, Y., Tanaka, H., Kusano, M., Fukushima, A., Tokizawa, M., Yamamoto, Y. Y., Tada, Y., Suzuki, Y., and *Matsushita, T. (2017) Light controls protein localization through phytochrome-mediated alternative promoter selection. Cell, 171, 1316-1325.
    http://www.sciencedirect.com/science/article/pii/S0092867417312400

Notaguchi group

  • -2018-
    Original papers
    Endo, M., Yoshida, M., Sasaki, Y., Negishi, K., Horikawa, K., Daimon, Y., Kurotani, K., Notaguchi, M., Abe, M., and *Araki, T. (2018) Re-evaluation of florigen transport kinetics with separation of functions by mutations that uncouple flowering initiation and long-distance transport. Plant Cell Physiol., 59, 1621-1629.
    https://doi.org/10.1093/pcp/pcy063
  • -2017-
    Original papers
    *Kasahara, R. D., Notaguchi, M., and Honma, Y. (2017) Discovery of pollen tube-dependent ovule enlargement morphology phenomenon, a new step in plant reproduction. Commun. Integr. Biol., 10, e1338989 (4 pages).
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5595410/
    Review papers
    Tsutsui, H. and *Notaguchi, M. (2017) The use of grafting to study systemic signaling in plants. Plant Cell Physiol., 58, 1291-1301.
    https://doi.org/10.1093/pcp/pcx098
    *Notaguchi, M. (2017) Systemic RNA in plants. BSJ-Review, 8, 121-129.
  • -2016-
    Original papers
    #*Kasahara, R. D., #Notaguchi, M., Nagahara, S., Suzuki, T., Susaki, D., Honma, Y., Maruyama, D., and Higashiyama, T. (2016) Pollen tube contents initiate ovule enlargement and enhance seed coat development without fertilization. Sci. Adv., 2, e1600554 (7 pages).
    http://advances.sciencemag.org/content/2/10/e1600554.full

Saijo group

  • -2019-
    Review papers
    *Saijo, Y. and Loo, E. P. (2019) Plant immunity in signal integration between biotic and abiotic stress responses. New Phytol., 225, 87-104.
    https://doi.org/10.1111/nph.15989
    Books
    #Tajima, Y., #Loo, E. P., and *Saijo, Y. (2019) Plant physiological and molecular mechanisms in cross-regulation of biotic-abiotic stress responses. In “Priming-Mediated Stress and Cross-Stress Tolerance in Crop Plants” edited by Hossain, M. A., et al. Elsevier, 21-34.
  • -2018-
    Original papers
    Shinya, T., Yasuda, S., Hyodo, K., Tani, R., Hojo, Y., Fujiwara, Y., Hiruma, K., Ishizaki, T., Fujita, Y., *Saijo, Y., and *Galis, I. (2018) Integration of danger peptide signals with herbivore‐associated molecular pattern signaling amplifies anti‐herbivore defense responses in rice. Plant J., 94, 626-637.
    https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.13883
    Ogita, N., Okushima, Y., Tokizawa, M., Yamamoto, Y. Y., Tanaka, M., Seki, M., Makita, Y., Matsui, M., Okamoto-Yoshiyama, K., Sakamoto, T., Kurata, T., Hiruma, K., Saijo, Y., Takahashi, N., and Umeda, M. (2018) Identifying the target genes of SUPPRESSOR OF GAMMA RESPONSE 1, a master transcription factor controlling DNA damage response in Arabidopsis. Plant J., 94, 439-453.
    https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.13866
    *Saijo, Y., Loo, E. P., and Yasuda, S. (2018) Pattern recognition receptors and signaling in plant-microbe interactions. Plant J., 93, 592-613.
    https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.13808
    Review papers
    *Saijo, Y., Loo, E. P., and Yasuda, S. (2018) Pattern recognition receptors and signaling in plant-microbe interactions. Plant J., 93, 592-613.
    https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.13808
  • -2017-
    Original papers
    Ariga, H., #Katori, T., #Tsuchimatsu, T., Hirase, T., Tajima, Y., Parker, J. E., Alcázar, R., Koornneef, M., Hoekenga, O., Lipka, A. E., Gore, M. A., Sakakibara, H., Kojima, M., Kobayashi, Y., Iuchi, S., Kobayashi, M., Shinozaki, K., Sakata, Y., Hayashi, T., Saijo, Y., and *Taji, T. (2017) NLR locus-mediated trade-off between abiotic and biotic stress adaptation in Arabidopsis. Nature Plants, 3, 17072 (8 pages).
    https://www.nature.com/articles/nplants201772
    Review papers
    #Yasuda, S., #Okada, K., and *Saijo, Y. (2017) A look at plant immunity through the window of the multitasking coreceptor BAK1. Curr. Opin. Plant Biol., 38, 10-18.
    http://www.sciencedirect.com/science/article/pii/S1369526617300110

Seki group

  • -2019-
    Original papers
    *Rymen, B., Kawamura, A., Lambolez, A., Inagaki, S., Takebayashi, A., Iwase, A., Sakamoto, Y., Sako, K., Favero, D. S., Ikeuchi, M., Suzuki, T., Seki, M., Kakutani, T., Roudier, F., and *Sugimoto, K. (2019) Histone acetylation orchestrates wound-induced transcriptional activation and cellular reprogramming in Arabidopsis. Commun. Biol., 2, 404 (15 pages).
    https://www.nature.com/articles/s42003-019-0646-5
    Ueda, M., Matsui, A., Watanabe, S., Kobayashi, M., Saito, K., Tanaka, M., Ishida, J., Kusano, M., Seo, M., and *Seki, M. (2019) Transcriptome analysis of the hierarchical response of HDAC proteins that respond in an antagonistic manner to salinity stress. Front. Plant Sci., 10, 1323 (11 pages).
    https://www.frontiersin.org/articles/10.3389/fpls.2019.01323/full
    Akter, A., Takahashi, S., Deng, W., Shea, D.J., Taylor, J. M., Shimizu, M., Miyaji, N., Osabe, K., Nishida, N., Suzuki, Y., Helliwell, C. A., Seki, M., Peacock, W. J., Dennis, E. S., and *Fujimoto, R. (2019) The histone modification H3 lysine 27 tri-methylation has conserved gene regulatory roles in the triplicated genome of Brassica rapa L. DNA Res., 26, 433-443.
    https://academic.oup.com/dnaresearch/article/26/5/433/5588861
    #Kurita, K., #Sakamoto, Y., Naruse, S., Matsunaga, T. M., Arata, H., Higashiyama, T., Habu, Y., Utsumi, Y., Utsumi, C., Tanaka, M., Takahashi, S., Kim, J. M., Seki, M., Sakamoto, T., and *Matsunaga, S. (2019) Intracellular localization of histone deacetylase HDA6 in plants. J. Plant Res., 132, 629-640.
    https://link.springer.com/article/10.1007%2Fs10265-019-01124-8
    #Shea, D. J., #Nishida, N., Takada, S., Itabashi, E., Takahashi, S., Akter, A., Miyaji, N., Osabe, K., Mehraj, H., Shimizu, M., Seki, M., Kakizaki, T., Okazaki, K., Dennis, E. S., and *Fujimoto, R. (2019) Long noncoding RNAs in Brassica rapa L. following vernalization. Sci. Rep., 9, 9302 (11 pages).
    https://www.nature.com/articles/s41598-019-45650-w
    *Sakamoto, K., Ogiwara, N., Kaji, T., Sugimoto, Y., Ueno, M., Sonoda, M., Matsui, A., Ishida, J., Tanaka, M., Totoki, Y., Shinozaki, K., and Seki, M. (2019) Transcriptome analysis of soybean (Glycine max) root genes differentially expressed in rhizobial, arbuscular mycorrhizal, and dual symbiosis. J. Plant Res., 132, 541-568.
    https://link.springer.com/article/10.1007/s10265-019-01117-7
    Utsumi, Y., Utsumi, C., Tanaka, M., Ha, C. V., Takahashi, S., Matsui, A., Matsunaga, T. M., Matsunaga, S., Kanno, Y., Seo, M., Okamoto, Y., Moriya, E., and *Seki, M. (2019) Acetic acid treatment enhances the drought avoidance in cassava (Manihot esculenta Crantz). Front. Plant Sci., 10, 521 (12 pages).
    https://www.frontiersin.org/articles/10.3389/fpls.2019.00521/full
    Takahashi, N., Ogita, N., Takahashi, T., Taniguchi, S., Tanaka, M., Seki, M., and *Umeda, M. (2019) A regulatory module controlling stress-induced cell cycle arrest in Arabidopsis. eLife, 8, e43944 (27 pages).
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6449083/
    #Ishihara, H., *#Sugimoto, K., Tarr, P. T., Temman, H., Kadokura, S., Inui, Y., Sakamoto, T., Sasaki, T., Aida, M., Suzuki, T., Inagaki, S., Morohashi, K., Seki, M., Kakutani, T., Meyerowitz, E. M., and *Matsunaga, S. (2019) Primed histone demethylation regulates shoot regenerative competency. Nature Commun., 10, 1786 (15 pages).
    https://www.nature.com/articles/s41467-019-09386-5
    Patanun, O., Viboonjun, U., Punyasuk, N., Thitamadee, S., Seki, M., and *Narangajavana, J. (2019) Cassava microRNAs and storage root development. Biologia Plantarum, 63, 193-199.
    https://bp.ueb.cas.cz/artkey/bpl-201901-0022_cassava-micrornas-and-storage-root-development.php
    Review papers
    Ueda, M. and *Seki, M. (2019) Histone modifications form epigenetic regulatory networks to regulate abiotic stress response. Plant Physiol., in press.
    https://doi.org/10.1104/pp.19.00988
    Bashir, K., Matsui, A., Rasheed, S., and *Seki, M. (2019) Recent advances in the characterization of plant transcriptomes in response to drought, salinity, heat and cold stress. F1000 Faculty Reviews, in press.
    https://f1000research.com/articles/8-658/v1
    *Ohtani, M., Kurihara, Y., Seki, M., and Crespi, M. (2019) RNA-mediated plant behavior. Plant Cell Physiol., 60, 1893-1896.
    https://doi.org/10.1093/pcp/pcz168
    Matsui, A., Nakaminami, K., and *Seki, M. (2019) Biological function of changes in RNA metabolism in plant adaptation to abiotic stress. Plant Cell Physiol., 60, 1897-1905.
    https://academic.oup.com/pcp/advance-article-abstract/doi/10.1093/pcp/pcz068/5486301?redirectedFrom=fulltext
    *Seki, M. (2019) Editorial. Plant Mol. Biol., 100, 1-2.
    https://link.springer.com/article/10.1007%2Fs11103-019-00858-2
    *Matsui, A. and *Seki, M. (2019) The involvement of long noncoding RNAs in response to plant stress. Methods Mol. Biol., 1933, 151-171.
    https://link.springer.com/protocol/10.1007%2F978-1-4939-9045-0_8
  • -2018-
    Original papers
    Sako, K., Sunaoshi, Y., Tanaka, M., Matsui, A., and *Seki, M. (2018) The duration of high-salinity stress tolerance in Arabidopsis thaliana. Plant Signal. Behav., 13, e1500065 (3 pages).
    https://doi.org/10.1080/15592324.2018.1500065
    Ueda, M., Matsui, A., Nakamura, T., Abe, T., Sunaoshi, Y., Shimada, H., and *Seki, M. (2018) Versatility of HDA19-deficiency in increasing the tolerance of Arabidopsis to different environmental stresses. Plant Signal. Behav., 13, e1475808 (4 pages).
    https://doi.org/10.1080/15592324.2018.1475808
    Nakaminami, K., Okamoto, M., Higuchi-Takeuchi, M., Yoshizumi, T., Yamaguchi, Y., Fukao, Y., Shimizu, M., Ohashi, C., Tanaka, M., Matsui, M., Shinozaki, K., *Seki, M., and *Hanada, K.(2018) AtPep3 is a hormone-like peptide that plays a role in salinity stress tolerance of plants. Proc. Natl. Acad. Sci. U.S.A., 115, 5810-5815.
    http://www.pnas.org/content/115/22/5810
    #Rasheed, S., #Bashir, K., Kim, J. M., Ando, M., Tanaka, M., and *Seki, M. (2018) The modulation of acetic acid pathway genes in Arabidopsis improves survival under drought stress. Sci. Rep., 8, 7831 (15 pages).
    https://www.nature.com/articles/s41598-018-26103-2
    Ogita, N., Okushima, Y., Tokizawa, M., Yamamoto, Y. Y., Tanaka, M., Seki, M., Makita, Y., Matsui, M., Okamoto-Yoshiyama, K., Sakamoto, T., Kurata, T., Hiruma, K., Saijo, Y., Takahashi, N., and Umeda, M. (2018) Identifying the target genes of SUPPRESSOR OF GAMMA RESPONSE 1, a master transcription factor controlling DNA damage response in Arabidopsis. Plant J., 94, 439-453.
    https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.13866
    Nguyen, H. M., Sako, K., Matsui, A., Ueda, M., Tanaka, M., Ito, A., Nishino, N., Yoshida, M., and *Seki, M. (2018) Transcriptomic analysis of Arabidopsis thaliana plants treated with the Ky-9 and Ky-72 histone deacetylase inhibitors. Plant Signal. Behav., 13, e1448333 .
    https://www.tandfonline.com/doi/abs/10.1080/15592324.2018.1448333
    Books
    Ueda, M., Sako, K., and *Seki, M. (2018) Epigenetic regulations and modifications for enhanced salinity stress tolerance in plants. In "Salinity Responses and Tolerance in Plants, Volume 2: Exploring RNAi, Genome Editing and Systems Biology" edited by Kumar, V., Wani, S. H., Suprasanna, P., and Tran, L.-S. P. Springer, 77-91.
    *Nakaminami, K., and Seki, M. (2018) RNA regulation in plant cold stress response. In "Survival Strategies in Extreme Cold and Desiccation: Adaptation Mechanisms and their Application" edited by Drs. Iwaya-Inoue, M., Uemura, M. and Sakurai, M. Springer Japan, 1081, 23-44.
    Bashir, K., Rasheed, S., Matsui, A., Iida, K., Tanaka, M., and *Seki, M. (2018) Monitoring transcriptomic changes in soil-grown roots and shoots of Arabidopsis thaliana subjected to a progressive drought stress, In "Methods in Molecular Biology - Root Development" edited by Barbez, E. and Ristova, D. Humana Press, 1761, 223-230.
  • -2017-
    Original papers
    Ueda, M., Matsui, A., Tanaka, M., Nakamura, T., Abe, T., Sako, K., Sasaki, T., Kim, J. M., Ito, A., Nishino, N., Shimada, H., Yoshida, M., and *Seki, M. (2017) The distinct roles of class I and II RPD3-like histone deacetylases in salinity stress response. Plant Physiol., 175, 1760-1773.
    http://www.plantphysiol.org/content/175/4/1760
    Li, W., Nguyen, K. H., Chu, H. D., Ha, C. V., Watanabe, Y., Osakabe, Y., Leyva-González, M., Sato, M., Toyooka, K., Voges, L., Tanaka, M., Mostofa, M. G., Seki, M., Seo, M., Yamaguchi, S., Nelson, D. C., Tian, C., Herrera-Estrella, L., and *Tran, L. P. (2017) The karrikin receptor KAI2 promotes drought resistance in Arabidopsis thaliana. PLoS Genet., 13, e1007076 (23 pages).
    http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007076
    Shirai, K., Matsuda, F., Nakabayashi, R., Okamoto, M., Tanaka, M., Fujimoto, A., Shimizu, M., Shinozaki, K., Seki, M., Saito, K., and *Hanada, K. (2017) A highly specific genome-wide association study integrated with transcriptome data reveals the contribution of copy number variations to specialized metabolites in Arabidopsis thaliana accessions. Mol. Biol. Evol., 34, 3111-3122.
    https://academic.oup.com/mbe/article-abstract/34/12/3111/4110007?redirectedFrom=fulltext
    Matsui, A., Iida, K., Tanaka, M., Yamaguchi, K., Mizunashi, K., Kim, J. M., Takahashi, S., Kobayashi, N., Shigenobu, S., Shinozaki, K., and *Seki, M. (2017) Novel stress-inducible antisense RNAs of protein-coding loci are synthesized by RNA-dependent RNA polymerase. Plant Physiol., 175, 457-472.
    http://www.plantphysiol.org/content/175/1/457.long
    Nguyen, H. M., Sako, K., Matsui, A., Suzuki, Y., Mostofa, M. G., Ha, C. V., Tanaka, M., Tran, L. P., Habu, Y., and *Seki, M. (2017) Ethanol enhances high-salinity stress tolerance by detoxifying reactive oxygen species in Arabidopsis thaliana and rice. Front. Plant Sci., 8, 1001 (10 pages).
    http://journal.frontiersin.org/article/10.3389/fpls.2017.01001/full
    #*Kim, J. M., #To, T. K., Matsui, A., Tanoi, K., Kobayashi, N. I., Matsuda, F., Habu, Y., Ogawa, D., Sakamoto, T., Matsunaga, S., Bashir, K., Rasheed, S., Ando, M., Takeda, H., Kawaura, K., Kusano, M., Fukushima, A., Takaho, A. E., Kuromori, T., Ishida, J., Morosawa, T., Tanaka, M., Torii, C., Takebayashi, Y., Sakakibara, H., Ogihara, Y., Saito, K., Shinozaki, K., Devoto, A., and *Seki, M. (2017) Acetate-mediated novel survival strategy against drought in plants. Nature Plants, 3, 17097 (7 pages).
    https://www.nature.com/articles/nplants201797
    Nguyen, C. C., Nakaminami, K., Matsui, A., Watanabe, S., Kanno, Y., Seo, M., and *Seki, M. (2017) Overexpression of oligouridylate binding protein 1b results in ABA hypersensitivity. Plant Signal. Behav., 12, e1282591 (10 pages).
    https://www.tandfonline.com/doi/full/10.1080/15592324.2017.1282591
    Patanun, O., Ueda, M., Itouga, M., Kato, Y., Utsumi, Y., Matsui, A., Tanaka, M., Utsumi, C., Sakakibara, H., Yoshida, M., Narangajavana, J., and *Seki, M. (2017) The histone deacetylase inhibitor suberoylanilide hydroxamic acid alleviates salinity stress in cassava. Front. Plant Sci, 7, 2039 (16 pages).
    https://www.frontiersin.org/articles/10.3389/fpls.2016.02039/full
    #Kurita, K., #Sakamoto, T., Yagi, N., Sakamoto, Y., Ito, A., Nishino, N., Sako, K., Yoshida, M., Kimura, H., Seki, M., and *Matsunaga, S. (2017) Live imaging of H3K9 acetylation in plant cells. Sci. Rep., 7, 45894 (9 pages).
    https://www.nature.com/articles/srep45894

Shimizu group

  • -2019-
    Original papers
    Sato, Y., Tezuka, A., Kashima, M., Deguchi, A., Shimizu-Inatsugi, R., Yamazaki, M., *Shimizu, K. K., and *Nagano, J. A. (2019) Transcriptional variation in glucosinolate biosynthetic genes and inducible responses to aphid herbivory on field-grown Arabidopsis thaliana. Front. Genet., 10, 787 (12 pages).
    https://www.frontiersin.org/articles/10.3389/fgene.2019.00787/full
    Sato, Y., Shimizu-Inatsugi, R., Yamazaki, M., *Shimizu, K. K., and *Nagano, A. J. (2019) Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana. BMC Plant Biol., 19, 163 (12 pages).
    https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-019-1705-2
  • -2018-
    Original papers
    *#Song, Y. H., #Kubota, A., Kwon, M. S., Covington, M. F., Lee, N., Taagen, E. R., Cintron, D. L., Hwang, D. Y., Akiyama, R., Hodge, S. K., Huang, H., Nguyen, N. H., Nusinow, D. A., Millar, A. J., Shimizu, K. K., and *Imaizumi, T. (2018) Molecular basis of flowering under natural long-day conditions in Arabidopsis. Nature Plants, 4, 824-835.
    https://www.nature.com/articles/s41477-018-0253-3

Suzaki group

  • -2018-
    Original papers
    *Yoro, E., Nishida, H., Ogawa-Ohnishi, M., Yoshida, C., Suzaki, T., Matsubayashi, Y., and *Kawaguchi, M. (2018) PLENTY, a hydroxyproline O-arabinosyltransferase, negatively regulates root nodule symbiosis in Lotus japonicus. J. Exp. Bot., 70, 507-517.
    https://academic.oup.com/jxb/article/70/2/507/5142751
    Ohta, M., Sato, A., Renhu, N., Yamamoto, T., Oka, N., Zhu, J. K., Tada, Y., Suzaki, T., and *Miura, K. (2018) MYC-type transcription factors, MYC67 and MYC70, interact with ICE1 and negatively regulate cold tolerance in Arabidopsis. Sci. Rep., 8, 11622 (12 pages).
    https://www.nature.com/articles/s41598-018-29722-x
    Mori, K., Renhu, N., Naito, M., Nakamura, A., Shiba, H., Yamamoto, T., Suzaki, T., *Iida H., and *Miura, K. (2018) Ca2+-permeable mechanosensitive channels MCA1 and MCA2 mediate cold-induced cytosolic Ca2+ increase and cold tolerance in Arabidopsis. Sci. Rep., 8, 550 (10 pages).
    https://www.nature.com/articles/s41598-017-17483-y
    Nishida, H., Tanaka, S., Handa, Y., Ito, M., Sakamoto, Y., Matsunaga, S., Betsuyaku, S., Miura, K., Soyano, T., Kawaguchi, M., and *Suzaki, T. (2018) A NIN-LIKE PROTEIN mediates nitrate-induced control of root nodule symbiosis in Lotus japonicus. Nature Commun., 9, 499 (14 pages)
    https://www.nature.com/articles/s41467-018-02831-x
    Review papers
    Nishida, H. and *Suzaki, T. (2018) Two negative regulatory systems of root nodule symbiosis: how are symbiotic benefits and costs balanced? Plant Cell Physiol., 59, 1733-1738.
    https://academic.oup.com/pcp/advance-article/doi/10.1093/pcp/pcy102/5025671
    Nishida, H. and *Suzaki, T. (2018) Nitrate-mediated control of root nodule symbiosis. Curr. Opin. Plant Biol., 44, 129-136.
    https://www.sciencedirect.com/science/article/pii/S1369526618300104
  • -2016-
    Original papers
    Nishida, H., Handa, Y., Tanaka, S., *Suzaki, T., and *Kawaguchi, M. (2016) Expression of the CLE-RS3 gene suppresses root nodulation in Lotus japonicus. J. Plant Res., 129, 909-919.
    http://link.springer.com/article/10.1007%2Fs10265-016-0842-z
    Pfeiffer, A., Janocha, D., Dong, Y., Medzihradszky, A., Schöne, S., Daum, G., Suzaki, T., Forner, J., Langenecker, T., Rempel, E., Schmid, M., Wirtz, M., Hell, R., and *Lohmann, J. U. (2016) Integration of light and metabolic signals for stem cell activation at the shoot apical meristem. eLife, 5, e17023 (21 pages).
    https://elifesciences.org/content/5/e17023

Takahashi group

  • -2019-
    Original papers
    Ishikawa, S., Barrero, J. M., Takahashi, F., Nakagami, H., Peck, S. C., Gubler, F., Shinozaki, K., and *Umezawa, T. (2019) Comparative phosphoproteomic analysis reveals a decay of ABA signaling in barley embryos during after-ripening. Plant Cell Physiol., 60, 2758–2768.
    https://doi.org/10.1093/pcp/pcz163
    Sato, H., Suzuki, T., Takahashi, F., Shinozaki, K., and *Yamaguchi-Shinozaki, K. (2019) NF-YB2 and NF-YB3 have functionally diverged and differentially induce drought and heat stress-specific genes. Plant Physiol., 180, 1677-1690.
    https://doi.org/10.1104/pp.19.00391
    #Shinozawa, A., #Otake, R., Takezawa, D., Umezawa, T., Komatsu, K., Tanaka, K., Amagai, A., Ishikawa, S., Hara, Y., Kamisugi, Y., Cuming, A. C., Hori, K., Ohta, H., Takahashi, F., Shinozaki, K., Hayashi, T., Taji, T., and *Sakata, Y. (2019) SnRK2 protein kinases represent an ancient system in plants for adaptation to a terrestrial environment. Commun. Biol., 2, 30 (13 pages).
    https://www.nature.com/articles/s42003-019-0281-1
    Ishikawa, S., Barrero, J., Takahashi, F., Peck, S., Gubler, F., Shinozaki, K., and *Umezawa, T. (2019) Comparative phosphoproteomic analysis of barley embryos with different dormancy during imbibition. Int. J. Mol. Sci., 20, 451 (15 pages).
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6359383/
    Mizoi, J., Kanazawa, N., Kidokoro, S., Takahashi, F., Qin, F., Morimoto, K., Shinozaki, K., and *Yamaguchi-Shinozaki, K. (2019) Heat-induced inhibition of phosphorylation of the stress-protective transcription factor DREB2A promotes thermotolerance of Arabidopsis thaliana. J. Biol. Chem., 294, 902-917.
    http://www.jbc.org/content/294/3/902
    Review papers
    *Takahashi, F., Hanada, K., Kondo, T., and Shinozaki, K. (2019) Hormone-like peptides and small coding genes in plant stress signaling and development. Curr. Opin. Plant Biol., 51, 88-95.
    https://www.sciencedirect.com/science/article/pii/S1369526619300287
    *Takahashi, F. and *Shinozaki, K. (2019) Long-distance signaling in plant stress response. Curr. Opin. Plant Biol., 47, 106-111.
    https://www.sciencedirect.com/science/article/pii/S136952661830075X
    Books
    *Todaka, D., Takahashi, F., Yamaguchi-Shinozaki, K., and Shinozaki, K. (2019) Chapter Three - ABA-responsive gene expression in response to drought stress: cellular regulation and long-distance signaling. In "Advances in Botanical Research vol. 92" edited by Marion-Poll, A. and Seo, M. ELSEVIER, 83-113.
    https://doi.org/10.1016/bs.abr.2019.05.001
  • -2018-
    Original papers
    Sato, H., Takasaki, H., Takahashi, F., Suzuki, T., Iuchi, S., Mitsuda, N., Ohme-Takagi, M., Ikeda, M., Seo, M., Yamaguchi-Shinozaki, K., and *Shinozaki, K. (2018) Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 115, E11178-E11187.
    http://www.pnas.org/content/115/47/E11178.full
    *Takahashi, F., Suzuki, T., Osakabe, Y., Betsuyaku, S., Kondo, Y., Dohmae, N., Fukuda, H., Yamaguchi-Shinozaki, K., and *Shinozaki, K. (2018) A small peptide modulates stomatal control via abscisic acid in long-distance signaling. Nature, 556, 235-238.
    https://www.nature.com/articles/s41586-018-0009-2
    Books
    *Takahashi, F., Kuromori, T., Sato, H., and *Shinozaki, K. (2018) Regulatory gene networks in drought stress responses and resistance in plants. In "Survival strategies in extreme cold and desiccation: Adaptation mechanisms and their application" edited by Iwaya-Inoue, M., Sakurai, M., and Uemura, M. Springer, Chapter 12, 189-214.
  • -2017-
    Original papers
    #Morimoto, K., #Ohama. N., Kidokoro, S., Mizoi, J., Takahashi, F., Todaka, D., Mogami, J., Sato, H., Qin, F., Kim, J. S., Fukao, Y., Fujiwara, M., Shinozaki, K., and *Yamaguchi-Shinozaki, K. (2017) BPM-CUL3 E3 ligase modulates thermotolerance by facilitating negative regulatory domain-mediated degradation of DREB2A in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 114, E8528-E8536.
    http://www.pnas.org/content/114/40/E8528.full
    Kidokoro, S., Yoneda, K., Takasaki, H., Takahashi, F., Shinozaki, K., and *Yamaguchi-Shinozaki, K. (2017) Different cold-signaling pathways function in the responses to rapid and gradual decreases in temperature. Plant Cell, 29, 760-774.
    http://www.plantcell.org/content/29/4/760
    #Soma, F., #Mogami, J., Yoshida, T., Abekura, M., Takahashi, F., Kidokoro, S., Mizoi, J., Shinozaki, K., and *Yamaguchi-Shinozaki, K. (2017) ABA-unresponsive SnRK2 protein kinases regulate mRNA decay under osmotic stress in plants. Nature Plants, 3, 16204.
    https://www.nature.com/articles/nplants2016204
  • -2016-
    Original papers
    Ohama, N., Kusakabe, K., Mizoi, J., Zhao, H., Kidokoro, S., Koizumi, S., Takahashi, F., Ishida, T., Yanagisawa, S., Shinozaki, K., and *Yamaguchi-Shinozaki, K. (2016) The transcriptional cascade in the heat stress response of Arabidopsis is strictly regulated at the level of transcription factor expression. Plant Cell, 28, 181-201.
    http://www.plantcell.org/content/28/1/181

Takano group

  • -2019-
    Original papers
    Pastorczyk, M., Kosaka, A., Piślewska-Bednarek, M., López, G., Frerigmann, H., Kułak, K., Glawischnig, E., Molina, A., Takano, Y., and *Bednarek, P. (2019) The role of CYP71A12 monooxygenase in pathogen-triggered tryptophan metabolism and Arabidopsis immunity. New Phytol, 225, 400-412.
    https://doi.org/10.1111/nph.16118
    #Isozumi, N., #Inoue, Y., #Imamura, T., *Mori, M., *Takano, Y., and *Ohki, S. (2019) Ca2+-dependent interaction between calmodulin and CoDN3, an effector of Colletotrichum orbiculare. Biochem. Biophys. Res. Commun., 514, 803-808.
    https://doi.org/10.1016/j.bbrc.2019.05.007
    Irieda, H., Inoue, Y., Mori, M., Yamada, K., Oshikawa, Y., Saitoh, H., Uemura, A., Terauchi, R., Kitakura, S., Kosaka, K., Singkaravanit-Ogawa, S., and *Takano, Y. (2019) Conserved fungal effector suppresses PAMP-triggered immunity by targeting plant immune kinases. Proc. Natl. Acad. Sci. U.S.A., 116, 496-505.
    https://www.pnas.org/content/116/2/496

Takezawa group

  • -2019年-
    Original papers
    Jahan, A., Komatsu, K., Wakida-Sekiya, M., Hiraide, M., Tanaka, K., Ohtake, R., Umezawa, T., Toriyama, T., Shinozawa, A., Yotsui, I., Sakata, Y., and *Takezawa, D. (2019) Archetypal roles of an abscisic acid receptor in drought and sugar responses in liverworts. Plant Physiol., 179, 317-328.
    http://www.plantphysiol.org/content/179/1/317
    Shinozawa, A., Otake, R., Takezawa, D., Umezawa, T., Komatsu, K., Tanaka, K., Amagai, A., Ishikawa, S., Hara, Y., Kamisugi, Y., Cuming, A. C., Hori, K., Ohta, H., Takahashi, F., Shinozaki, K., Hayashi, T., Taji, T., and *Sakata, Y. (2019) SnRK2 protein kinases represent an ancient system in plants for adaptation to a terrestrial environment. Commun. Biol., 2, 30 (13 pages).
    https://www.nature.com/articles/s42003-019-0281-1
  • -2018-
    Original papers
    Amagai, A., Honda, Y., Ishikawa, S., Hara, Y., Kuwamura, M., Shinozawa, A., Sugiyama, N., Ishihama, Y., Takezawa, D., Sakata, Y., Shinozaki, K., and *Umezawa, T. (2018) Phosphoproteomic profiling reveals ABA-responsive phosphosignaling pathways in Physcomitrella patens. Plant J., 94, 699-708.
    https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.13891
    Books
    *Takezawa, D. (2018) Mechanisms underlying freezing and desiccation tolerance in bryophytes. In "Survival strategies in extreme cold and desiccation: Adaptation mechanisms and their application" edited by Iwaya-Inoue, M., Sakurai, M., and Uemura, M. Springer, 167-187.
    https://link.springer.com/chapter/10.1007%2F978-981-13-1244-1_10
  • -2017-
    Original papers
    *Bowman, J. L., *Kohchi, T., *Yamato, K. T., Jenkins, J., Shu, S., Ishizaki, K., Yamaoka, S., Nishihama, R., Nakamura, Y., Berger, F., Adam, C, Aki, S. S., Althoff, F., Araki, T., Arteaga-Vazquez, M. A., Balasubrmanian, S., Barry, K., Bauer, D., Boehm, C. R., Briginshaw, L., Caballero-Perez, J., Catarino, B., Chen, F., Chiyoda, S., Chovatia, M., Davies, K. M., Delmans, M., Demura, T., Dierschke, T., Dolan, L., Dorantes-Acosta, A. E., Eklund, D. M., Florent, S. N., Flores-Sandoval, E., Fujiyama, A, Fukuzawa, H., Galik, B., Grimanelli, D., Grimwood, J., Grossniklaus, U., Hamada, T., Haseloff, J., Hetherington, A. J., Higo, A., Hirakawa, Y., Hundley, H. N, Ikeda, Y., Inoue, K., Inoue, S., Ishida, S., Jia, O., Kakita, M., Kanazawa, T., Kawai, Y., Kawashima, T., Kennedy, M., Kinose, K., Kinoshita, T., Kohara, Y., Koide, E., Komatsu, K., Kopischke, S., Kubo, M., Kyozuka, J., Lagercrantz, U., Lin, S. S., Lindquist, E., Lipzen, A. M., Lu, C. W., De Luna, E., Martienssen, R. A., Minamino, N., Mizutani, M., Mizutani, M., Mochizuki, N., Monte, I., Mosher, R., Nagasaki, H., Nakagami, H., Naramoto, S., Nishitani, K., Ohtani, M., Okamoto, T., Okumura, M., Phillips, J., Pollak, B., Reinders, A., Rövekamp, M., Sano, R., Sawa, S., Schmid, M. W., Shirakawa, M., Solano, R., Spunde, A., Suetsugu, N., Sugano, S., Sugiyama, A., Sun, R., Suzuki, Y., Takenaka, M., Takezawa, D., Tomogane, H., Tsuzuki, M., Ueda, T., Umeda, M., Ward, J. M., Watanabe, Y., Yazaki, K., Yokoyama, R., Yoshitake, Y., Yotsui, I., Zachgo, S., and Schmutz, J. (2017) Insights into land plant evolution garnered from the Marchantia polymorpha genome. Cell,, 171, 287-304.
    http://www.sciencedirect.com/science/article/pii/S0092867417311248
    Hagiwara, K., Saruhashi, M., Ishizaki, Y., Sakata, Y., and *Takezawa, D. (2017) Isolation of abscisic acid-insensitive mutant lines of Physcomitrella patens by ultraviolet irradiation mutagenesis. Cryobiol. Cryotechnol., 63, 53-56.
    https://www.jstage.jst.go.jp/article/cryobolcryotechnol/63/1/63_53/_article
  • -2016-
    Original papers
    Ghosh, T. K., Kaneko, M., Akter, K., Murai, S., Komatsu, K., Ishizaki, K., Yamato, K. T., Kohchi, T., and *Takezawa, D. (2016) Abscisic acid-induced gene expression in the liverwort Marchantia polymorpha is mediated by evolutionarily conserved promoter elements. Physiol. Plant., 156, 407-420.
    https://onlinelibrary.wiley.com/doi/10.1111/ppl.12385

Tamada group

  • -2019-
    Original papers
    *#Ishikawa, M., #Morishita, M., Higuchi, Y., Ichikawa, S., Ishikawa, T., Nishiyama, T., Kabeya, Y., Hiwatashi, Y., Kurata, T., Kubo, M., Shigenobu, S., Tamada, Y., Sato, Y., and *Hasebe, M (2019) Physcomitrella STEMIN transcription factor induces stem cell formation with epigenetic reprogramming. Nature Plants, 5, 681-690.
    https://www.nature.com/articles/s41477-019-0464-2
    *Komuro, K., Oe, K., Tamada, Y., and Nomura, T. (2019) Complex amplitude mapping based on adaptive autofocusing algorithm. Opt. Rev., 26, 342-348.
    https://link.springer.com/article/10.1007/s10043-019-00507-5
    *Kubo, M., Nishiyama, T., Tamada, Y., Sano, R., Ishikawa, M., Murata, T., Imai, A., Lang, D., Demura, T., *Reski, R., and *Hasebe, M. (2019) Single-cell transcriptome analysis of Physcomitrella leaf cells during reprogramming using microcapillary manipulation. Nucleic Acids Res., 47, 4539-4553.
    https://academic.oup.com/nar/article/47/9/4539/5381068
    Sugimoto, R., Maruyama, R., Tamada, Y., Arimoto H., and *Watanabe, W. (2019) Contrast enhancement by oblique illumination microscopy with an LED array. Optik, 183, 92-98. [Cover]
    https://www.sciencedirect.com/science/article/pii/S0030402619301858
  • -2018-
    Original papers
    Ogasawara, Y., Sugimoto, R., Maruyama, R., Arimoto, H., Tamada, Y., and *Watanabe, W. (2018) Mobile-phone-based Rheinberg microscope with a light-emitting diode array. J. Biomed. Opt., 24, 031007 (6 pages).
    https://doi.org/10.1117/1.JBO.24.3.031007

Toyota group

  • -2018-
    Original papers
    *Toyota, M., Spencer, D., Sawai-Toyota, S., Wang, J., Zhang, T., Koo, A., Howe, G., and *Gilroy, S. (2018) Glutamate triggers long-distance, calcium-based plant defense signaling. Science, 361, 1112-1115.
    http://science.sciencemag.org/content/361/6407/1112

Uchida group

  • -2019-
    Original papers
    *Hirakawa, Y., Uchida, N. Yamaguchi, Y. L., Tabata, R., Ishida, S., Ishizaki, K., Nishihama, R., Kohchi, T., *Sawa, S., and *Bowman, J. L. (2019) Control of proliferation in the haploid meristem by CLE peptide signaling in Marchantia polymorpha. PLOS Genet., 15, e1007997 (20 pages).
    https://doi.org/10.1371/journal.pgen.1007997
    Review papers
    *Uchida, N. and Torii, K. U. (2019) Stem cells within the shoot apical meristem: identity, arrangement and communication. Cell. Mol. Life Sci., 76, 1067-1080.
    https://link.springer.com/article/10.1007%2Fs00018-018-2980-z
  • -2018-
    Original papers
    Yamada, R., Murai, K., Uchida, N., Takahashi, K., Iwasaki, R., Tada, Y., Kinoshita, T., Itami, K., *Torii, K. U., and *Hagihara, S. (2018) A super strong engineered auxin-TIR1 pair. Plant Cell Physiol., 59, 1538-1544.
    https://doi.org/10.1093/pcp/pcy127
    #Uchida, N., #Takahashi, K., Iwasaki, R., Yamada, R., Yoshimura, M., Endo, T. A., Kimura, S., Zhang, H., Nomoto, M., Tada, Y., Kinoshita, T., Itami, K., *Hagihara, S., and *Torii, K. U. (2018) Chemical hijacking of auxin signaling with an engineered auxin-TIR1 pair. Nature Chem. Biol., 14, 299-305.
    https://www.nature.com/articles/nchembio.2555
    Kimura, Y., Tasaka, M., *Torii, K. U. and *Uchida, N. (2018) ERECTA-family genes coordinate stem cell functions between the epidermal and internal layers of the shoot apical meristem. Development, 145, dev156380 (9 pages).
    http://dev.biologists.org/content/145/1/dev156380.long
    Review papers
    *Torii, K. U., Hagihara, S., Uchida, N., and Takahashi, K. (2018) Harnessing synthetic chemistry to probe and hijack auxin signaling. New Phytol, 220, 417-424.
    https://doi.org/10.1111/nph.15337
  • -2017-
    Original papers
    Ziadi, A., Uchida, N., Kato, H., Hisamatsu, R., Sato, A., Hagihara, S., *Itami, K., and *Torii, K. U. (2017) Discovery of synthetic small molecules that enhance the number of stomata: C-H functionalization chemistry for plant biology. Chem. Commun., 53, 9632-9635.
    http://pubs.rsc.org/en/Content/ArticleLanding/2017/CC/C7CC04526C#!divAbstract
    Hirakawa, Y., Shinohara, H., Welke, K., Irle, S., Matsubayashi, Y., *Torii, K. U., and *Uchida, N. (2017) Cryptic bioactivity capacitated by synthetic hybrid plant peptides. Nature Commun., 8, 14318 (7 pages).
    http://www.nature.com/articles/ncomms14318
    Ikematsu, S., Tasaka, M., *Torii, K. U., and *Uchida, N. (2017) ERECTA-family receptor kinase genes redundantly prevent premature progression of secondary growth in the Arabidopsis hypocotyl. New Phytol., 213, 1697-1709.
    https://doi.org/10.1111/nph.14335
    Review papers
    *Hirakawa, Y., *Torii, K. U., and *Uchida, N. (2017) Mechanisms and strategies shaping plant peptide hormones. Plant Cell Physiol., 58, 1313-1318.
    https://academic.oup.com/pcp/article-lookup/doi/10.1093/pcp/pcx069
    Tameshige, T., Ikematsu, S., *Torii, K. U., and *Uchida, N. (2017) Stem development through vascular tissues: EPFL-ERECTA family signaling that bounces in and out of phloem. J. Exp. Bot., 68, 45-53.
    https://academic.oup.com/jxb/article/68/1/45/2670566

Yamaguchi group

  • -2019-
    Original papers
    Goh, T., Toyokura, K., Yamaguchi, N., Okamoto, Y., Uehara, T., Kaneko, S., Takebayashi, Y., Kasahara, H., Ikeyama, Y., Okushima, Y., Nakajima, K., Mimura, T., Tasaka, M., and *Fukaki, H. (2019) Lateral root initiation requires the sequential induction of transcription factors LBD16 and PUCHI in Arabidopsis thaliana. New Phytol., 224, 749-760.
    https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.16065
    Sun, B., Zhou, Y., Cai, J., Shang, E., Yamaguchi, N., Xiao, J., Looi, L. S., Wee, W. Y., Gao, X., Wagner, D., and *Ito, T (2019) Integration of transcriptional repression and Polycomb-mediated silencing of WUSCHEL in floral meristems. Plant Cell, 31, 1488-1505.
    https://doi.org/10.1105/tpc.18.00450
    Wu, J., *Yamaguchi, N., and *Ito, T. (2019) Histone demethylases control root elongation in response to stress-signaling hormone abscisic acid. Plant Signal. Behav., 14, 1604019.
    https://doi.org/10.1080/15592324.2019.1604019
    Wu, J., Ichihashi, Y., Suzuki, T., Shibata, A., Shirasu, K., *Yamaguchi, N., and *Ito, T. (2019) Abscisic acid‐dependent histone demethylation during postgermination growth arrest in Arabidopsis. Plant Cell Environ., 42, 2198-2214.
    https://doi.org/10.1111/pce.13547
    Review papers
    Lee, Z. H., Hirakawa, T., Yamaguchi, N., and *Ito, T. (2019) The roles of plant hormones and their interactions with regulatory genes in determining meristem activity. Int. J. Mol. Sci., 20, 4065.
    https://www.mdpi.com/1422-0067/20/16/4065/htm
    Xu, Ｙ., Yamaguchi, N., Gan, E. S., and Ito, T. (2019) When to stop: an update on molecular mechanisms of floral meristem termination. J. Exp. Bot., 70, 1711-1718.
    https://doi.org/10.1093/jxb/erz048
  • -2018-
    Original papers
    Yamaguchi, N., Huang, J., Tatsumi, Y., Abe, M., Sugano, S. S., Kojima, M., Takebayashi, Y., Kiba, T., Yokoyama, R., Nishitani, K., Sakakibara, H., and *Ito, T. (2018) Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy. Nature Commun., 9, 5290 (15 pages).
    https://www.nature.com/articles/s41467-018-07763-0
    Nishizawa-Yokoi, A. and *Yamaguchi, N. (2018) Gene expression and transcription factor binding tests using mutated-promoter reporter lines. Methods Mol. Biol., 1830, 291-305.
    https://link.springer.com/protocol/10.1007/978-1-4939-8657-6_17
    Ze Hong, L., Yamaguchi, N., and *Ito, T. (2018) Using CRISPR/Cas9 system to introduce targeted mutation in Arabidopsis. Methods Mol. Biol., 1830, 93-108.
    https://link.springer.com/protocol/10.1007%2F978-1-4939-8657-6_6
    Xu, Y., Prunet, N., Gan, E.-S., Wang, Y., Stewart, D., Wellmer, F., Huang, J., Yamaguchi, N., Tatsumi, Y., Kojima, M., Kiba, T., Sakakibara, H., Jack, T. P., Meyerowitz, E. M., and *Ito, T. (2018) SUPERMAN regulates floral whorl boundaries through control of auxin biosynthesis. EMBO J., 37, e97499.
    http://emboj.embopress.org/content/37/11/e97499
    Uemura, A., Yamaguchi, N., Xu, Y., Wee, W. Y., Ichihashi, Y., Suzuki, T., Shibata, A., Shirasu, K., and *Ito, T. (2018) Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis. Plant Reprod., 31, 89-105.
    https://link.springer.com/article/10.1007%2Fs00497-017-0315-0
    Books
    Yamaguchi, N. (2018) Plant Transcription Factors, Methods in Molecular Biology. Springer, 1830, 1-396.
  • -2017-
    Original papers
    #Yamaguchi, N., #Huang, J., Xu, Y., Tanoi, K., and *Ito, T. (2017) Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation. Nature Commun., 8, 1125 (15 pages).
    https://www.nature.com/articles/s41467-017-01252-6