Research Results - Research planning group

*Corresponding author, #These authors contributed equally to this work.
Underlines denote the study representative, and dotted underlines denote research team members

Research planning group

Kinoshita Group

  • -2017-
    Original papers
    Peterson, J., Inoue, S., Kelly, S. M., Sullivan, S., Kinoshita, T., *Christie, J. M. (2017) Functional characterization of a constitutively active kinase variant of Arabidopsis phototropin 1. J. Biol. Chem., 292, 13843-13852.
    http://www.jbc.org/content/292/33/13843
    *Inoue, S., Iwashita, N., Takahashi, Y., Gotoh, E., Okuma, E., Hayashi, M., Tabata, R., Takemiya, A., Murata, Y., Doi, M., Kinoshita, T., *Shimazaki, K. (2017) Brassinosteroid involvement in Arabidopsis thaliana stomatal opening. Plant Cell Physiol., 58, 1048-1058.
    https://academic.oup.com/pcp/article-lookup/doi/10.1093/pcp/pcx049
    Wang, Y. and *Kinoshita, T. (2017) Measurement of stomatal conductance in rice. Bio-protocol, 7, e2226 (6 pages).
    http://www.bio-protocol.org/e2226
    *Nakamura, A., Tochio, N., Fujioka, S., Ito, S., Kigawa, T,. Shimada, Y., Matsuoka, M., Yoshida, S., Kinoshita, T., Asami, T., Seto, H., Nakano, T. (2017) Molecular actions of two synthetic brassinosteroids, iso-carbaBL and 6-deoxoBL, which cause altered physiological activities between Arabidopsis and rice. PLoS ONE, 12, e0174015 (16 pages).
    http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0174015
    Hayashi, M., Inoue, S., Ueno, Y., Kinoshita, T. (2017) A Raf-like protein kinase BHP mediates blue light-dependent stomatal opening. Scientific Reports, 7, 45586.
    https://www.nature.com/articles/srep45586
    Joo, S., Nishimura, Y., Cronmiller, E., Hong, R. H., Kariyawasam, T., Wang, M. H., Shao, N. C., Akkad, S. E., Suzuki, T., Higashiyama, T., Jin, E., Lee, J. H. (2017) Gene regulatory networks for the haploid-to-diploid transition of Chlamydomonas reinhardtii. Plant Physiol., in press.
    http://www.plantphysiol.org/content/early/2017/07/14/pp.17.00731
    Review papers
    Inoue, S. and Kinoshita, T. (2017) Blue light regulation of stomatal opening and the plasma membrane H+-ATPase. Plant Physiol., 174, 531-538.
    http://www.plantphysiol.org/content/174/2/531
  • -2016-
    Original papers
    Okumura, M. and *Kinoshita, T. (2016) Measurement of ATP hydrolytic activity of plasma membrane H+-ATPase from Arabidopsis thaliana leaves. Bio-protocol, 6, e2044 (7 pages).
    http://www.bio-protocol.org/e2044
    Inoue, S., Takahashi, K., Okumura, H. N., and Kinoshita, T. (2016) Auxin influx carrier AUX1 confers acid resistance for Arabidopsis root elongation through the regulation of plasma membrane H+-ATPase. Plant Cell Physiol., 57, 2194-2201.
    http://pcp.oxfordjournals.org/content/early/2016/08/08/pcp.pcw136
    *Uehara, K. B., *Wang, D. R., Furuta, T., Minami, A., Nagai, K., Gamuyao,R., Asano, K., Angeles-Shim, R. B., Shimizu, Y., Ayano, M., Komeda, N., Doi, K., Miura, K., Toda, Y., Kinoshita, T., Okuda, S., Higashiyama, T., Nomoto, M., Tada, Y., Shinohara, H., Matsubayashi, Y., Greenberg, A., Wu, J., Yasui, H., Yoshimura, A., Mori, H., McCouch, S. R., and Ashikari, M. (2016) Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice, Proc. Natl Acad. Sci. U S A., 113, 8969-8974.
    http://www.pnas.org/content/early/2016/07/26/1604849113
    Aleman, F., Yazaki, J., Lee, M., Takahashi, Y., Kim, A. Y., Kinoshita, T., Ecker, JR., and Schroeder, J. I. (2016) An ABA-increased interaction of the PYL6 ABA receptor with MYC2 transcription factor: A putative link of ABA and JA signaling. Scientific Reports, 6, 28941.
    http://www.nature.com/articles/srep28941
    Yamauchi S, Takemiya A, Sakamoto T, Kurata T, Kinoshita, T. , and Shimazaki K. (2016) Plasma membrane H+-ATPase1 (AHA1) plays a major role in stomatal opening in response to blue light. Plant Physiol., 171, 2731-43.
    http://www.plantphysiol.org/content/171/4/2731
    Takahashi Y, Kinoshita, T., Matsumoto M, and Shimazaki K. (2016) Inhibition of the Arabidopsis bHLH transcription factor by monomerization through abscisic acid-induced phosphorylation. Plant Journal, 87, 559-67.
    http://onlinelibrary.wiley.com/doi/10.1111/tpj.13217/abstract
    Toda Y, Wang Y, Takahashi A, Kawai Y, Tada Y, Yamaji N, Ma J. F, Ashikari M, Kinoshita, T. (2016) Oryza sativa H+-ATPase (OSA) is involved in the regulation of dumbbell-shaped guard cells of rice. Plant Cell Physiol., 57, 1220-1230.
    http://pcp.oxfordjournals.org/content/57/6/1220
    Okumura M, Inoue S, Kuwata K, Kinoshita, T. (2016) Photosynthesis activates plasma membrane H+-ATPase via sugar accumulation. Plant Physiol., 171, 580-589.
    http://www.plantphysiol.org/content/171/1/580
    Nakamichi, N., Takao S, Kudo T, Kiba T, Wang Y, Kinoshita, T. , Sakakibara H. (2016) Improvement of Arabidopsis biomass and cold-, drought-, and salinity-stress tolerance by modified circadian clock-associated PSEUDO-RESPONSE REGULATORs. Plant Cell Physiol., 57, 1085-1097.
    http://pcp.oxfordjournals.org/content/57/5/1085
    Nagatoshi Y, Mitsuda N, Hayashi M, Inoue S, Okuma E, Kubo A, Murata Y, Seo M, Saji H, Kinoshita, T., Ohme-Takagi M. (2016) GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement. Proc. Natl. Acad. Sci. USA, 113, 4218-4223.
    http://www.pnas.org/content/113/15/4218.abstract
    Kamioka, M., Takao, S., Suzuki, T., Taki, K., Higashiyama, T., Kinoshita, T. and *Nakamichi, N. (2016) Direct repression of evening genes by CIRCADIAN CLOCK-ASSOCIATED 1 in Arabidopsis circadian clock. Plant Cell, 28, 696-711.
    http://www.plantcell.org/content/28/3/696.short
    Yamada, K., Yamaguchi, K., Shirakawa, T., Nakagami, H., Mine, A., Ishikawa, K., Fujiwara, M., Narusaka, M., Narusaka, Y., Ichimura, K., Kobayashi, Y., Matsui, H., Nomura, Y., Nomoto, M., Tada, Y., Fukamizo, T., Tsuda, K., Shirasu, K., Shibuya, N., and *Kawasaki, T. (2016) The Arabidopsis CERK1-associated kinase PBL27 connects chitin perception to MAPK activation. EMBO J., 35, 2468-2483.
    http://emboj.embopress.org/content/early/2016/09/26/embj.201694248
    Hayami, N., Kimura, M., Tokizawa, M., Iuchi, S., Kurihara, Y., Matsui, M., Nomoto, M., Tada, Y., Sakai, Y., and *Yamamoto, Y.Y. (2016) The responses of Arabidopsis ELIP2 to UV-B, high light, and cold stress are regulated by a transcriptional regulatory unit composed of two elements. Plant Physiol., 169, 840-855.
    http://www.ncbi.nlm.nih.gov/pubmed/26175515
    Inoue K, Nishihama R, Kataoka H, Hosaka M, Manabe R, Nomoto M, Tada Y., Ishizaki K, Kohchi T. (2016) Phytochrome signaling is mediated by PHYTOCHROME INTERACTING FACTOR in the liverwort Marchantia polymorpha. Plant Cell, 28, 1406-1421.
    http://www.plantcell.org/content/28/6/1406
    *Fujii, S., Suzuki, T., Giegé, P., Higashiyama, T., Koizuka, N., Shikanai, T. (2016) The Restorer-of-fertility-like 2 pentatricopeptide repeat protein and RNase P are required for the processing of mitochondrial orf291 RNA in Arabidopsis. Plant J. , 86, 504-513.
    http://onlinelibrary.wiley.com/doi/10.1111/tpj.13185/abstract
    *Kasahara, R. D., Notaguchi, M., Nagahara, S., Suzuki, T., Susaki, D., Honma, Y., Maruyama, D., Higashiyama, T. (2016) Pollen tube contents initiate ovule enlargement and enhance seed coat development without fertilization. Sci. Adv., 2, e1600554 (7 pages).
    http://advances.sciencemag.org/content/2/10/e1600554
    Kozgunova, E., Suzuki, T., Higashiyama, T., *Kurihara, D. (2016) Haspin has multiple functions in the plant cell division regulatory network. Plant Cell Physiol., 57, 848-861.
    https://www.ncbi.nlm.nih.gov/pubmed/26872832
    Kanamori, A., Sugita, Y., Yuasa, Y., Suzuki, T., Kawamura, K., Uno, Y., Kamimura, K., Matsuda, Y., Wilson, C. A., Amores, A., Postlethwait, J. H., Suga, K., *Sakakura, Y. (2016) A genetic map for the only self-fertilizing vertebrate. G3 (Bethesda), 6, 1095-1106.
    https://www.ncbi.nlm.nih.gov/pubmed/26865699
    Yoshida, A., Nakano, S., Suzuki, T., Ihara, K., Higashiyama, T., *Mori, I. (2016) A glial K+/Cl- cotransporter modifies temperature-evoked dynamics in Caenorhabditis elegans sensory neurons. Genes Brain Behav., 15, 429-440.
    http://onlinelibrary.wiley.com/doi/10.1111/gbb.12260/abstract
    Suzuki, T., Matsushima, C., Nishimura, S., Higashiyama, T., Sasabe, M., Machida, Y. (2016) Identification of Phosphoinositide-Binding Protein PATELLIN2 as a Substrate of Arabidopsis MPK4 MAP Kinase during Septum Formation in Cytokinesis. Plant Cell Physiol., 57, 1744-1755.
    https://academic.oup.com/pcp/article/57/8/1744/2755849/Identification-of-Phosphoinositide-Binding-Protein
    Review papers
    Takahashi, K. and Kinoshita, T. (2016) The regulation of plant cell expansion: Auxin-induced turgor-driven cell elongation. Molecular Cell Biology of the Growth and Differentiation of Plant Cells, 156-173. CRC Press.
    http://www.crcnetbase.com/doi/abs/10.1201/b20316-13
  • -2015-
    Original papers
    *#Tsuchiya Y., #Yoshimura M., Sato Y., Kuwata K., Toh S., Holbrook-Smith D., Zhang H., McCourt P., Itami K., Kinoshita T., and *Hagihara S. (2015) Probing strigolactone receptors in Striga hermonthica with fluorescence. Science, 349, 864-868.
    http://www.sciencemag.org/content/349/6250/864.abstract
    Kimura Y, Aoki S, Ando E, Kitatsuji A, Watanabe A, Ohnishi M, Takahashi K, Inoue S, Nakamichi N, Tamada Y, and *Kinoshita T. (2015) A flowering integrator, SOC1, affects stomatal opening in Arabidopsis thaliana. Plant Cell Physiol., 56, 640-649.
    http://pcp.oxfordjournals.org/content/56/4/640.short
    *Tsuji, H., Tachibana, C., Tamaki, S., Taoka, K., Kyozuka, J., and Shimamoto, K. (2015) Hd3a promotes lateral branching in rice. Plant J., 82, 256-266.
    http://www.ncbi.nlm.nih.gov/pubmed/25740115
    Saleh, A., Withers, J., Mohan, R., Marques, J., Gu, Y., Yan, S., Zavaliev, R., Nomoto, M., Tada, Y., and *Dong, X. (2015) Posttranslational modifications of the master transcriptional regulator NPR1 enable dynamic but tight control of plant immune responses. Cell Host & Microbe, 18, 169-182.
    http://www.sciencedirect.com/science/article/pii/S1931312815002978
    Matsuo, M., Johnson, J. M., Hieno, A., Tokizawa, M., Nomoto, M., Tada, Y., Godfrey, R., Obokata, J., Sherameti, I., Yamamoto, Y. Y., Bohmer, F. D., and *Oelmuller, R. (2015) High REDOX RESPONSIVE TRANSCRIPTION FACTOR1 levels result in accumulation of reactive oxygen species in Arabidopsis thaliana shoots and roots. Mol. Plant, 8, 1253-1273.
    http://www.sciencedirect.com/science/article/pii/S1674205215001793
    *Tsukagoshi, H., Suzuki, T., Nishikawa, K., Agarie, S., Ishiguro, S., and Higashiyama, T. (2015) RNA-seq analysis of the response of the halophyte, Mesembryanthemum crystallinum (ice plant) to high salinity. PLoS ONE.,10, e0118339 (16 pages).
    http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0118339
    *Okamoto, S., Suzuki, T., Kawaguchi, M., Higashiyama, T., and Matsubayashi, Y. (2015) A comprehensive strategy for identifying long-distance mobile peptides in xylem sap. Plant J., 84, 611-620.
    https://www.ncbi.nlm.nih.gov/pubmed/26333921
    Schaap, P., Barrantes, I., Minx, P., Sasaki, N., Anderson, R. W., Bénard, M., Biggar, K. K., Buchler, N. E., Bundschuh, R., Chen, X., Fronick, C., Fulton, L., Golderer, G., Jahn, N., Knoop, V., Landweber, L.F., Maric, C., Miller, D., Noegel, A. A., Peace, R., Pierron, G., Sasaki, T., Schallenberg-Rüdinger, M., Schleicher, M., Singh, R., Spaller, T., Storey, K. B., Suzuki, T., Tomlinson, C., Tyson, J. J., Warren, W. C., Werner, E. R., Werner-Felmayer, G., Wilson, R. K., Winckler, T., Gott, J. M., Glöckner, G., *Marwan, W. (2015) The physarum polycephalum genome reveals extensive use of prokaryotic two-component and metazoan-type tyrosine kinase signaling. Genome Biol Evol., 8, 109-125.
    https://www.ncbi.nlm.nih.gov/pubmed/26615215
    *Notaguchi, M., Higashiyama, T., and Suzuki, T. (2015) Identification of mRNAs that move over long distances using an RNA-Seq analysis of Arabidopsis/Nicotiana benthamiana heterografts. Plant Cell Physiol. , 56, 311-321.
    https://academic.oup.com/pcp/article-lookup/doi/10.1093/pcp/pcu210
    *Song, X. J., Kuroha, T., Ayano, M., Furuta, T., Nagai, K., Komeda, N., Segami, S., Miura, K., Ogawa, D., Kamura, T., Suzuki, T., Higashiyama, T., Yamasaki, M., Mori, H., Inukai, Y., Wu, J., Kitano, H., Sakakibara, H., *Jacobsen, S. E., *Ashikari, M. (2015) Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice. Proc. Natl. Acad. Sci. U.S.A, 112, 76-81.
    http://www.pnas.org/content/112/1/76.abstract
    Kobayashi, K., Suzuki, T.., Iwata, E., Nakamichi, N., Suzuki, T., Chen, P., Ohtani, M., Ishida, T., Hosoya, H., Muller, S., Leviczky, T., Pettko-Szandtner, A., Darula, Z., Iwamoto, A., Nomoto, M., Tada, Y., Higashiyama, T., Demura, T., Doonan, J. H., Hauser, M. T., Sugimoto, K., Umeda, M., Magyar, Z., Bogre, L., and Ito, M. (2015) Transcriptional repression by MYB3R proteins regulates plant organ growth. EMBO J., 34, 1992-2007.
    http://onlinelibrary.wiley.com/doi/10.15252/embj.201490899/abstract
    Review papers
    Takahashi, Y. and Kinoshita, T. (2015) Stomatal function has an element of hysteresis.
    New Phytol., 205, 455-457.
    http://onlinelibrary.wiley.com/doi/10.1111/nph.13149/abstract
    *Satake, A., Sakurai, G., and *Kinoshita, T. (2015) Modeling strategies for plant survival, growth and reproduction. Plant Cell Physiol., 56, 583-585.
    http://pcp.oxfordjournals.org/content/56/4/583.short
    *Nakamichi, N. (2015) Adaptation to the local environment by modifications of the photoperiod response in crops. Plant Cell Physiol., 56, 594-604.
    https://academic.oup.com/pcp/article-lookup/doi/10.1093/pcp/pcu181

Matsubayashi Group

  • -2017-
    Original papers
    #Ohkubo, Y., #Tanaka, M., Tabata, R., Ohnishi, M. O. and *Matsubayashi, Y. (2017) Shoot-to-root mobile polypeptides involved in systemic regulation of nitrogen acquisition, Nature Plants, 3, 17029.
    http://www.nature.com/articles/nplants201729
    Hirakawa, Y., Shinohara, H., Welke, K., Irle, S., Matsubayashi, Y., *Torii, K. U. and *Uchida, N. (2017) Cryptic bioactivity capacitated by synthetic hybrid plant peptides. Nat. Commun., 8, 14318 (7 pages).
    http://www.nature.com/articles/ncomms14318
    #Nakayama,T., #Shinohara, H., Tanaka, M., Baba, K., Ohnishi, M. O. and *Matsubayashi, Y. (2017) A peptide hormone required for Casparian strip diffusion-barrier formation in Arabidopsis roots, Science, 355, 284-286.
    http://science.sciencemag.org/content/355/6322/284.full
    Kanadome, T., *Shibata,H., Kuwata, K, Takahara, T., and Maki, M. (2017) The calcium-binding protein ALG-2 promotes endoplasmic reticulum exit site localization and polymerization of Trk-fused gene (TFG) protein. FEBS J., 284, 56-76.
    http://onlinelibrary.wiley.com/doi/10.1111/febs.13949/full
    Yamada,T., Tahara,E., Kanke, M., Kuwata, K, and *Nishiyama, T. (2017) Drosophila Dalmatian combines sororin and shugoshin roles in establishment and protection of cohesion. EMBO J., 36, 1513-1527.
    http://emboj.embopress.org/content/36/11/1513
  • -2016-
    Original papers
    *Uehara, K. B., *Wang, D. R., Furuta, T., Minami, A., Nagai, K., Gamuyao,R., Asano, K., Angeles-Shim, R. B., Shimizu, Y., Ayano, M., Komeda, N., Doi, K., Miura, K., Toda, Y., Kinoshita, T., Okuda, S., Higashiyama, T., Nomoto, M., Tada, Y., Shinohara, H., Matsubayashi, Y., Greenberg, A., Wu, J., Yasui, H., Yoshimura, A., Mori, H., McCouch, S. R., and Ashikari, M. (2016) Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice, Proc. Natl Acad. Sci. U S A., 113, 8969-8974.
    http://www.pnas.org/content/early/2016/07/26/1604849113
    Shinohara, H., Mori, A., Yasue, N., Sumida, K. and *Matsubayashi, Y. (2016) Identification of three LRR-RKs involved in perception of root meristem growth factor in Arabidopsis. Proc. Natl Acad. Sci. U S A., 113, 3897-3902.
    http://www.pnas.org/content/113/14/3897.long
    Okumura M, Inoue S, Kuwata K, Kinoshita, T. (2016) Photosynthesis activates plasma membrane H+-ATPase via sugar accumulation. Plant Physiol., 171, 580-589.
    http://www.plantphysiol.org/content/171/1/580
    Fujimoto, S., Sugano, S. S., Kuwata, K., Osakabe, K and *Matsunaga, S. (2016) Visualization of specific repetitive genomic sequences with fluorescent TALEs in Arabidopsis thaliana. J. Exp. Bot., 67, 6101-6110.
    http://jxb.oxfordjournals.org/content/67/21/6101.full
  • -2015-
    Original papers
    Xu, C., Liberatore, K. L., MacAlister, C. A., Huang, Z., Chu, Y. H., Jiang, K., Brooks, C., Ogawa-Ohnishi, M., Xiong, G., Pauly, M., Van Eck, J., Matsubayashi, Y., van der Knaap, E., and *Lippman, Z. B. (2015) A cascade of arabinosyltransferases controls shoot meristem size in tomato. Nature Genet. 47, 784-792.
    http://www.nature.com/ng/journal/v47/n7/abs/ng.3309.html?lang=en
    Wu, T., Kamiya, T., Yumoto, H., Sotta, N., Katsushi, Y., Shigenobu, S., Matsubayashi, Y., and *Fujiwara, T. (2015) An Arabidopsis thaliana copper-sensitive mutant suggests a role of phytosulfokine in ethylene production. J. Exp. Bot. 66, 3657-3667.
    http://www.ncbi.nlm.nih.gov/pubmed/25908239?dopt=Abstract
    *Shinohara, H., and Matsubayashi, Y. (2015) Reevaluation of the CLV3-receptor interaction in the shoot apical meristem: dissection of the CLV3 signaling pathway from a direct ligand-binding point of view. Plant J. 82, 328-336.
    http://www.ncbi.nlm.nih.gov/pubmed/25754504
    Ogawa-Ohnishi, M., and *Matsubayashi, Y. (2015) Identification of three potent hydroxyproline O-galactosyltransferases in Arabidopsis. Plant J. 81, 736-746.
    http://www.ncbi.nlm.nih.gov/pubmed/25600942
    *#Tsuchiya Y., #Yoshimura M., Sato Y., Kuwata K., Toh S., Holbrook-Smith D., Zhang H., McCourt P., Itami K., Kinoshita T., and *Hagihara S. (2015) Probing strigolactone receptors in Striga hermonthica with fluorescence. Science, 349, 864-868.
    http://www.sciencemag.org/content/349/6250/864.abstract

Matsunaga Group

  • -2017-
    Original papers
    Yagi, N., Matsunaga, S. and *Hashimoto, T. (2017) Insights into cortical microtubule nucleation and dynamics in Arabidopsis leaf cells. J. Cell Sci., in press.
    http://jcs.biologists.org/content/early/2017/06/14/jcs.203778
    #*Kim, J. M., #To, K. T., Matsui, A., Tanoi, K., Kobayashi, N., Matsuda, F., Habu, Y., Ogawa, D., Sakamoto, T., Matsunaga, S., Bashir, K., Rasheed, S., Ando, M., Takeda, H., Kawaura, K., Kusano, M., Fukushima, A., Endo, T., Kuromori, T., Ishida, J., Morosawa, T., Tanaka, M., Torii, C., Takebayashi, Y., Sakakibara, H., Ogihara, Y., Saito, K., , K., Devoto, A., and *Seki, M. (2017) Acetate-mediated novel survival strategy against drought in plants. Nature Plants, 3, 17097 (7 pages).
    https://www.nature.com/articles/nplants201797
    #Sakamoto, N. A., #Thuong Lan, V. H., #Fujimoto, S., Matsunaga, S. and Tanaka, A. (2017) An ion beam-induced Arabidopsis mutant with marked chromosomal rearrangement. J. Rad. Res., in press.
    https://academic.oup.com/jrr/article/3862018/An-ion-beam-induced-Arabidopsis-mutant-with-marke
    Matsunaga, T. M., Ogawa, D., Taguchi-Shiobara, F., Ishimoto, M., Matsunaga, S. and Habu Y. (2017) Direct quantitative evaluation of disease symptoms on living plant leaves growing under natural light. Breed. Sci., in press.
    https://www.jstage.jst.go.jp/article/jsbbs/advpub/0/advpub_16169/_article
    Okamura, E., Sakamoto, T., Sasaki, T. and *Matsunaga, S. (2017) A plant ancestral polo-like kinase sheds light on the mystery of the evolutionary disappearance of polo-like kinases in the plant kingdom. Cytologia, 82, 261-266
    https://www.jstage.jst.go.jp/article/cytologia/82/3/82_MS1944/_article
    #Spallek, T., #Melnyk, C., W., Wakatake, T., Zhang, J., Sakamoto, Y., Kiba, T., Yoshida, S., Matsunaga, S., Sakakibara, H. and *Shirasu, K. (2017) Inter-species hormonal control of host root morphology by parasitic plants. Proc. Natl. Acad. Sci. USA, 114, 5283-5288.
    http://www.pnas.org/content/early/2017/04/27/1619078114.full.pdf
    #Kurita,K., #Sakamoto,T., Yagi, N., Sakamoto, Y., Ito, A., Nishino, N., Sako,K., Yoshida, M., Kimura, H., Seki, M. and *Matsunaga, S. (2017) Live imaging of H3K9 acetylation in plant cells. Sci. Rep., 7, 45894 (9 pages).
    https://www.nature.com/articles/srep45894
    Hirakawa, T., Hasegawa, J., White, C and *Matsunaga, S. (2017) RAD54 forms DNA repair foci in response to DNA damage in living plant cells. Plant J., 90, 372-382.
    http://onlinelibrary.wiley.com/doi/10.1111/tpj.13499/abstract
    #*Kurihara, D., #Kimata, Y., Higashiyama, T., and *Ueda, M. (2017) In Vitro ovule cultivation for live-cell imaging of Zygote polarization and Embryo patterning in Arabidopsis thaliana. J. Vis. Exp., 127, e55975.
    https://www.jove.com/video/55975/
    *Ueda, M., Aichinger, E., Gong, W., Groot, E., Verstraeten, I., Vu, L. D., De Smet, I., Higashiyama, T., Umeda, M., *Laux, T. (2017) Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote. Genes & Dev., 31, 617-627.
    http://genesdev.cshlp.org/content/31/6/617.full
    Review papers
    Matsunaga, S. and Matsunaga, T. M. (2017) FISH with padlock probes can efficiently reveal the genomic position of low or single-copy DNA sequences. Cytologia, in press.
    Tsukaya, H. and Matsunaga, S. (2017) Tissue-dependency of the impact of endoreduplication on cell size. Plant Morphology, in press.
    Hoshino, A., Matsunaga, T. M., Sakamoto, T., and *Matsunaga, S. (2017) Hi-C revolution: from a snapshot of DNA-DNA interaction in a single cell to chromosome-scale de novo genome assembly. Cytologia, 82, 223-226.
    https://www.jstage.jst.go.jp/article/cytologia/82/3/82_170523/_article
    Sakamoto, Y. and *Matsunaga, S. (2017) Deep imaging of plant roots by a rapid transparency technique TOMEI. Cytologia, 82, 221-222.
    https://www.jstage.jst.go.jp/article/cytologia/82/3/82_170210/_article
    *Matsunaga, S. and Nakaya, A. (2017) Computational synteny analysis promotes a better understanding of chromosome evolution. Cytologia, 82, 101-104.
    https://www.jstage.jst.go.jp/article/cytologia/82/2/82_820201/_article
  • -2016-
    Original papers
    Fujimoto, S., Sugano, S. S., Kuwata, K., Osakabe, K and *Matsunaga, S. (2016) Visualization of specific repetitive genomic sequences with fluorescent TALEs in Arabidopsis thaliana. J. Exp. Bot., 67, 6101-6110.
    http://jxb.oxfordjournals.org/content/67/21/6101.full
    #Takagi, M., #Sakamoto, T., Suzuki, R., Nemoto, K., Obayashi, T., Matsunaga, T. M., Hirakawa, T., Kurihara, D., Nariai, Y., Urano, T., Sawasaki, T., *Matsunaga, S. (2016) Plant Aurora kinases interact with and phosphorylate transcription factors. J. Plant Res., 129, 1165-1178.
    http://link.springer.com/article/10.1007/s10265-016-0860-x
    Fujimoto, S., Matsunaga, S. and *Murata, M. (2016) Mapping of T-DNA and Ac/Ds by TAIL-PCR to analyze chromosomal rearrangements. Methods Mol. Biol., 1469, 207-216.
    http://www.ncbi.nlm.nih.gov/pubmed/27557698
    Hirakawa, T. and *Matsunaga, S. (2016) Three dimensional, live-cell imaging of chromosome dynamics in plant nuclei using chromatin tagging systems. Methods Mol. Biol., 1469, 189-195.
    http://www.ncbi.nlm.nih.gov/pubmed/27557696
    Yokoyama, R., Hirakawa, T., Hayashi, S., Sakamoto, T., and *Matsunaga, S. (2016) Dynamics of plant DNA replication based on PCNA visualization. Sci. Rep., 6, 29657.
    http://www.nature.com/articles/srep29657
    Sotta, N., Shantikumar, L., Sakamoto, T., Matsunaga, S. and Fujiwara, T. (2016) TPR5 is involved in directional cell division and is essential for the maintenance of meristem cell organisation in Arabidopsis thaliana. J. Exp. Bot., 67, 2401-2411.
    http://jxb.oxfordjournals.org/content/early/2016/02/16/jxb.erw043.full?sid=5056a9d1-44e7-4b6a-9a21-81552cc405b4
    Katagiri, Y., Hasegawa, J., Fujikura, U., Hoshino R., *Matsunaga, S. and *Tsukaya, H. (2016) The coordination of ploidy and cell size differs between cell layers in leaves. Development, 143:1120-1125.
    http://dev.biologists.org/content/early/2016/02/22/dev.130021
    Hasegawa, J., Sakamoto, Y., Nakagami, S., Aida, M., Sawa, S. and *Matsunaga, S. (2016) Three-dimensional imaging of plant organs using a simple and rapid transparency technique. Plant Cell Physiol., 57, 462-472.
    http://pcp.oxfordjournals.org/content/57/3/462.full
    #Kimata, Y., Higaki, T., Kawashima, T., Kurihara, D., Sato, Y., Yamada, T., Hasezawa, S., Berger, F., Higashiyama, T., and *Ueda, M. (2016) Cytoskeleton dynamics control the first asymmetric cell division in Arabidopsis zygote. Proc. Natl. Sci. USA., 113, 14157-14162. [Cover]
    http://www.pnas.org/content/113/49/14157.full?sid=2e9b9b43-088d-4060-8da6-ede6c586f6b7
    #*Nambo, M., Kurihara, D., Yamada, T., Nishiwaki, O. T., Kadofusa, N., Kimata, Y., Kuwata, K., Umeda, M., and #*Ueda, M. (2016) Combination of synthetic chemistry and live-cell imaging identified a rapid cell division inhibitor in tobacco and Arabidopsis thaliana. Plant Cell Physiol., 57, 2255-2268.
    http://pcp.oxfordjournals.org/content/57/11/2255
    Review papers
    Fujimoto, S. and *Matsunaga, S. (2016) Chromatin live imaging with genome editing techniques: switching from scissors to a lamp. Cytologia, 81, 359-362.
    Fujimoto, S. and *Matsunaga, S. (2016) Which is a reliable approach in the generation of artificial minichromosomes, bottom-up or top-down? Cytologia, 81, 251-256.
    https://www.jstage.jst.go.jp/article/cytologia/81/3/81_810302/_article
    Hirakawa, T. and *Matsunaga, S. (2016) Chromatin tagging systems contribute to live imaging analyses for chromatin dynamics. Cytologia, 81, 121-123.
    https://www.jstage.jst.go.jp/article/cytologia/81/2/81_810203/_article
    *Matsunaga, S. (2016) FISH is in the limelight again as more a cytogenetical technique for metaphase chromosomes. Cytologia, 81, 3-6.
    https://www.jstage.jst.go.jp/article/cytologia/81/1/81_3/_article
    Books
    Sakamoto, T., Sakamoto, Y. and *Matsunaga, S. (2016) Cell division and cell growth. In “Molecular cell biology of the growth and differentiation of plant cells” edited by Ray Rose. CRC press 86-98.
  • -2015-
    Original papers
    Izaguirre-Carbonell, J., Kawakubo, H., Murata, H., Tanabe, A., Takeuchi, T., Kusayanagi, T., Tsukuda, S., Hirakawa, T., Iwabata, K., Kanai, Y., Ohta, K., Miura, M., Sakaguchi, K., Matsunaga, S., Sahara, H., Kamisuki, S., and Sugawara, F. (2015) Novel anticancer agent, SQAP, binds to focal adhesion kinase and modulates its activity. Sci. Rep., 5, 15136.
    http://www.nature.com/articles/srep15136
    Oroguchi, T., Sekiguchi, Y., Kobayashi, A., Masaki, Y., Fukuda, A., Hashimoto, S., *Nakasako, M., Ichikawa, I., Kurumizaka, H., Shimizu, M., Inui, Y., Matsunaga, S., Kato, T., Namba, K., Yamaguchi, K., Kuwata, K., Kameda, H., Fukui, N., Kawata, Y., Kameshima, T., Takayama, Y., Yonekura, K., and Yamamoto, M. (2015) Cryogenic coherent X-ray diffraction imaging for biological non-crystalline particles using the KOTOBUKI-1 diffraction apparatus at SACLA. J. Phys. B., 48, 184003 (11 pages).
    http://iopscience.iop.org/0953-4075/48/18/184003/metrics
    Hirakawa, T., Katagiri, Y., Ando, T. and *Matsunaga, S. (2015) DNA double-strand breaks alter the spatial arrangement of homologous loci in plant cells. Sci. Rep., 5, 11058 (8 pages).
    http://www.nature.com/articles/srep11058
    #Takayama, Y., #Inui, Y., #Sekiguchi, Y., Kobayashi, A., Oroguchi, T., Yamamoto, M., *Matsunaga, S., *Nakasako, M. (2015) Coherent X-ray diffraction imaging of chloroplasts from Cyanidioschyzon merolae by using X-ray free electron laser. Plant Cell Physiol., 56, 1272-1286.
    http://pcp.oxfordjournals.org/content/early/2015/03/04/pcp.pcv032
    Gooh, K., Ueda, M., Aruga, K., Park, J., Arata, H., Higashiyama, T., and *Kurihara, D. (2015) Live-cell imaging and optical manipulation of Arabidopsis early embryogenesis. Dev. Cell 34, 242-251.
    http://www.sciencedirect.com/science/article/pii/S1534580715003974
    *Maruyama, D., Volz, R., Takeuchi, H., Mori, T., Igawa, T., Kurihara, D., Kawashima, T., Ueda, M., Ito, M., Umeda, M., Nishikawa, S., Gros-Hardt, R., and Higashiyama, T. (2015) Rapid elimination of the persistent synergid through a cell fusion mechanism. Cell 161, 907-918.
    http://www.sciencedirect.com/science/article/pii/S0092867415003050

Sugimoto Group

  • -2017-
    Original papers
    Rymen, B., Kawamura, A,, Schäefer, S., Breuer, C., Iwase, A., Shibata, M., Ikeda, M., Mitsuda, N., Koncz, C., Ohme-Takagi, M, Matsui, M. and *Sugimoto, K. (2017) ABA suppresses root hair growth via the OBP4 transcriptional regulator. Plant Physiol., 3, 1750-1762.
    http://www.plantphysiol.org/content/173/3/1750.full
    Iwase, A., Harashima, H., Ikeuchi, M., Rymen, B., Ohnuma, M., Komaki, S., Morohashi, K., Kurata, T., Nakata, M., Ohme-Takagi, M., Grotewold, E., and *Sugimoto, K. (2017) WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis, Plant Cell, 29, 54-69.
    http://www.plantcell.org/content/29/1/54
    Li, C., Sako, Y., Imai, A., Nishiyama, T., Thompson, K., Kubo, M., Hiwatashi, Y., Kabeya, Y., Karlson, D., Wu, S-H., Ishikawa, M., Murata, T., Benfey, P. N., Sato, Y., Tamada, Y., and Hasebe, M. (2017) A Lin28 homologue reprograms differentiated cells to stem cells in the moss Physcomitrella patens, Nat. Commun., 8, 14242 (13 pages).
    http://www.nature.com/articles/ncomms14242
    Ikeuchi, M. and Rhodes, J. (2017) Latest advances in plant development and environmental response: the inaugural Cold Spring Harbor Asia Plant Biology meeting in japan. Plant Cell Physiol., in press.
    https://academic.oup.com/pcp/article-lookup/doi/10.1093/pcp/pcx083
    Review papers
    #Franciosini, A., #Rymen, B., Favero, D. S, and *Sugimoto, K. (2017) Molecular networks orchestrating plant cell growth. Curr. Opin. Plant. Biol., 35, 98-104.
    http://www.sciencedirect.com/science/article/pii/S1369526616301984?via%3Dihub
  • -2016-
    Original papers
    Heyman J, Cools T, Shavialenka S, Canher B, Traas J, Vercauteren I, Van den Daele H, Persiau G, De Jaeger G, Sugimoto K, and *De Veylder L. (2016) The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nature Plants, 16165.
    https://www.ncbi.nlm.nih.gov/pubmed/27797356
    De Lucas M, Pu L, Turco G, Gaudinier A, Morao AK, Harashima H, Kim D, Ron M, Sugimoto K, Roudier F, and *Brady S. (2016) Transcriptional regulation of Arabidopsis Polycomb Repressive Complex 2 coordinates cell-type proliferation and differentiation. Plant Cell, 28, 2616-2631
    http://www.plantcell.org/content/28/10/2616.full
    Weimer AK, Biedermann S, Harashima H, Roodbarkelari F, Takahashi N, Foreman J, Guan Y, Pochon G, Heese M, Van Damme D, Sugimoto K, Koncz C, Doerner P, Umeda M, and *Schnittger A. (2016) The plant-specific CDKB1-CYCB1 complex mediates homologous recombination repair in Arabidopsis. EMBO J, 35, 2068-2086.
    http://emboj.embopress.org/content/35/19/2068
    Favero DS, Jacques CN, Iwase A, Le KN, Zhao J, Sugimoto K, and *Neff MM. (2016) SUPPRESSOR OF PHYTOCHROME B4-#3 represses genes associated with auxin signaling to modulate hypocotyl growth. Plant Physiol., 171:2701-16.
    http://www.plantphysiol.org/content/early/2016/06/24/pp.16.00405.abstract
    Cifuentes M, Jolivet S, Cromer L, Harashima H, Bulankova P, Renne C, Crismani W, Nomura Y, Nakagami H, Sugimoto K, Schnittger A, Riha K, and *Mercier R. (2016) TDM1 regulation determines the number of meiotic divisions. PLoS Genet, e1005856.
    http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005856
    Review papers
    *Schnittger A and *Sugimoto K. (2016) A journey to the interior of the cell. Curr Opin Plant Biol., in press.
    Ikeuchi M, Ogawa Y, Iwase A, *Sugimoto K. (2016) Plant regeneration: cellular origins and molecular mechanisms Developmet 143:1442-1451
    http://dev.biologists.org/content/143/9/1442
    Harashima H, *Sugimoto K. (2016) Integration of developmental and environmental signals into cell proliferation and differentiation through RETINOBLASTOMA-RELATED 1 Curr Opin Plant Biol., 29:95-103.
    http://www.sciencedirect.com/science/article/pii/S1369526615300054
  • -2015-
    Original papers
    Narender K, Harashima H, Shweta K, Jonathan B, Wang K, Sizani B. L, Bertrand L. L, Johnson M. C, Faulk C, Dale R, Simmons L. A, Churchman M. L, Sugimoto K, Kato N, Dasanayake M, Beemster G, Schnittger A and Larkin J. C (2015) Functional Conservation in the SIAMESE-RELATED Family of Cyclin-Dependent Kinase Inhibitors in Land Plants.
    Plant Cell.27:3065-3080
    http://www.plantcell.org/content/early/2015/11/06/tpc.15.00489.
    #Ikeuchi M, #Iwase A, Rymen B, H Harashima H, Shibata M, Ohnuma M, Breuer C, Morao AK, de Lucas M, De Veylder L, Goodrich J, Brady SM, Roudier F, and *Sugimoto K. (2015) PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nature Plants, 15089.
    http://www.nature.com/articles/nplants201589
    Kobayashi K, Kobayashi K, Suzuki T, Iwata E, Nakamichi N, Suzuki T, Chen P, Ohtani M, Ishida T, Hosoya H, Muller S, Leviczky T, Pettko-Szandtner A, Darula Z, Iwamoto A, Nomoto M, Tada Y, Higashiyama T, Demura T, Doonan JH, Hauser MT, Sugimoto K, Umeda M, Magyar Z, Bogre L, and *Ito M. (2015) Transcriptional repression by MYB3R proteins regulates plant organ growth. EMBO J 34(15): 1992-2007.
    http://onlinelibrary.wiley.com/doi/10.15252/embj.201490899/abstract
    Narukawa H, Yokoyama R, Komaki S, Sugimoto K, and *Nishitani K. (2015) Stimulation of cell elongation by tetraploidy in hypocotyls of dark-grown Arabidopsis seedlings. PLoS ONE 10(8):e0134547.
    http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0134547
    *Iwase A, Mita K, Nonaka S, Ikeuchi M, Koizuka C, Ohnuma M, Ezura H, Imamura J, *Sugimoto K. (2015) WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J Plant Res 128(3):389-97.
    http://www.ncbi.nlm.nih.gov/pubmed/25810222
    Kimura Y, Aoki S, Ando E, Kitatsuji A, Watanabe A, Ohnishi M, Takahashi K, Inoue S, Nakamichi N, Tamada Y and *Kinoshita T. (2015) A flowering integrator, SOC1, affects stomatal opening in Arabidopsis thaliana. Plant Cell Physiol., 56, 640-649.
    Review papers
    Ikeuchi M, Iwase A, *Sugimoto K (2015) Control of plant cell differentiation by histone modification and DNA methylation
    Curr. Opin. Plant. Biol.28, 60-67
    http://www.sciencedirect.com/science/article/pii/S1369526615001442
    *Sugimoto, K (2015) Plant cell reprogramming as an adaptive strategy. J Plant Res 128(3):345-7.
    http://link.springer.com/article/10.1007%2Fs10265-015-0718-7

Fukuda Group

  • -2017-
    Original papers
    Guo, X., Wang, J., Gardner, M., Fukuda, H., Kondo, Y., Etchells, J. P., Wang, X., and Mitchum, M. G. (2017) Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLOS Pathogens, in press.
    http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1006142
    *Endo, S., Iwamoto, K., and *Fukuda, H. (2017) Overexpression and cosuppression of xylem-related genes in an early xylem differentiation stage-specific manner by the AtTED4 promoter. Plant Biotech. J., in press.
    http://onlinelibrary.wiley.com/doi/10.1111/pbi.12784/full
    Yoo, C.-M., Naramoto, S., Sparks, J. A., Khan, B. R., Nakashima, J., Fukuda, H., and *Blancaflor, E. B. (2017) Deletion analysis of AGD1 reveals domains crucial for its plasma membrane recruitment and function in root hair polarity. J. Cell Sci., in press.
    http://jcs.biologists.org/content/early/2017/08/02/jcs.203828
    Sugiyama, Y., Wakazaki, M., Toyooka, K., Fukuda, H. and *Oda, Y. (2017) A novel plasma membrane-anchored protein regulates wood cell-wall deposition through microtubule-dependent lateral inhibition of Rho GTPase domains. Curr. Biol., in press.
    Inoue, K., Araki, T., *Endo, M. (2017) Integration of input signals into the gene network in the plant circadian clock. Plant Cell Physiol., 58, 977-982.
    https://academic.oup.com/pcp/article/58/6/977/3811177/Integration-of-Input-Signals-into-the-Gene-Network
    Books
    Saito, M., Nurani, A.M., *Kondo, Y. and *Fukuda H. (2017) Tissue culture of xylem differentiation with Arabidopsis leaves. In “Xylem-Methods and Protocols” edited by M. de Lucas and J. P. Etchells. Humana press, 59-65.
  • -2016-
    Original papers
    *Kondo, Y., Nurani, A.M., Saito, C., Ichihashi,Y., Saito, M., Yamazaki, K., Mitsuda, N., Ohme-Takagi, M., and *Fukuda, H. (2016) Vascular cell Induction culture System Using Arabidopsis Leaves (VISUAL) visualizes the sequential differentiation of sieve element-like cells. Plant Cell, 28, 1250-1262.
    http://www.plantcell.org/content/early/2016/05/18/tpc.16.00027.abstract
    *Doi, H., Chinen, A., Fukuda, H., Usuda, Y. (2016) Vibrio algivorus sp. nov., an alginate and agarose assimilating bacterium isolated from the gut flora of a turban shell marine snail. Int. J. Syst. Evol. Micr., 66, 3164-3169.
    https://www.ncbi.nlm.nih.gov/pubmed/27199227
    Inada, N., Betsuyaku, S., Shimada, T., Ebine, K., Ito, E., Kutsuna, N., Hasezawa, S., Takano, Y., and Fukuda, H., Nakano, A. and *Ueda, T. (2016) Modulation of plant RAB GTPase-mediated membrane trafficking pathway at the interface between plants and obligate biotrophic pathogens. Plant Cell Physiol., 57, 1854-1864. [Editor-in-chief's choice]
    https://www.ncbi.nlm.nih.gov/pubmed/27318282
    Morita, J., Kato, K., Nakane, T., Kondo, Y., Fukuda, H., Nishimasu, H., *Ishitani R., and *Nureki, O. (2016) Crystal structure of the plant receptor-like kinase TDR in complex with the TDIF peptide. Nat. Commun., 7, 12383.
    http://www.nature.com/ncomms/2016/160808/ncomms12383/full/ncomms12383.html
    *Naramoto, S., Dainobu, T., Tokunaga, H., Kyozuka, J. and Fukuda, H. (2016) Cellular and developmental function of ACAP type ARF-GAP proteins are diverged in plant cells. Plant Biotechnology, 33, 309-314.
    https://www.jstage.jst.go.jp/article/plantbiotechnology/33/4/33_16.0309a/_article
    Tazoe, Y., Sazuka, T., Yamaguchi, M., Saito, C., Ikeuchi, M., Kanno, K., Kojima, S., Hirano, K., Kitano, H., Kasuga, S., Endo, T., Fukuda, H., and *Makino, A. (2016) Growth properties and biomass production in the hybrid C4 crop sorghum bicolor. Plant Cell Physiol., 57, 944-952.
    https://www.ncbi.nlm.nih.gov/pubmed/26508521
    Zeng, J., Ding, Q., Fukuda, H., and *He, X.-Q. (2016) Fertilization Independent Endosperm genes repress NbGH3.6 and regulate the auxin level during shoot development in Nicotiana benthamiana. J. Exp. Bot., 67, 2207-2217.
    http://jxb.oxfordjournals.org/content/67/8/2207
    Endo, M., Shimizu, H., and Araki, T. (2016) Rapid and simple isolation of vascular, epidermal and mesophyll cells from plant leaf tissue. Nature Protocols, 11, 1388-1395.
    http://www.nature.com/nprot/journal/v11/n8/abs/nprot.2016.083.html
    Shimizu, H., Torii, K., Araki, T., and *Endo, M., (2016) Importance of epidermal clocks for regulation of hypocotyl elongation through PIF4 and IAA29. Plant Signal. Behav., 11, e1143999.
    https://www.ncbi.nlm.nih.gov/pubmed/26829165
    Higo, A., Niwa, M., Yamato, K. T., Yamada, L., Sawada, H., Sakamoto, T., Kurata, T., Shirakawa, M., Endo, M., Shigenobu, S., Yamaguchi, K., Ishizaki, K., Nishihama, R., Kohchi, T. and *Araki, T. (2016) Transcriptional framework of male gametogenesis in the liverwort Marchantia polymorpha L. Plant Cell Physiol., 57, 325-38.
    https://www.ncbi.nlm.nih.gov/pubmed/26858289
    Endo, M., Araki, T., and *Nagatani, A. (2016) Tissue-specific regulation of flowering by photoreceptors. Cell Mol. Life Sci., 73, 829-39.
    https://www.ncbi.nlm.nih.gov/pubmed/26621669
    Review papers
    Fukuda, H. (2016) Signaling, transcriptional regulation, and asynchronous pattern formation governing plant xylem development. Proc. Japan Acad. Series B, 92, 98-107.
    https://www.jstage.jst.go.jp/article/pjab/92/3/92_PJA9203B-02/_article
    *Ohashi, I. K. and Fukuda, H. (2016) Functional mechanism of bHLH complexes during early vascular development. Curr. Opin. Plant Biol., 33, 42-47.
    http://www.sciencedirect.com/science/article/pii/S1369526616300863
    *Endo, M. (2016) Tissue-specific circadian clocks in plants. Curr. Opin. Plant Biol., 29, 44-49.
    http://www.sciencedirect.com/science/article/pii/S1369526615001727
  • -2015-
    Original papers
    Kawamoto, N., Endo, M., and *Araki, T. (2015) Expression of a kinase-dead form of CPK33 involved in florigen complex formation causes delayed flowering. Plant Signal. Behav., 10, e1086856, 1-2.
    Shimizu, H., Katayama, K., Koto, T., Torii, K., Araki, T., and Endo, M. (2015) Decentralized circadian clocks process thermal and photoperiodic cues in specific tissues. Nature Plants, 1, 15163.
    http://www.nature.com/articles/nplants2015163
    Katayama H, Iwamoto K, Kariya Y, Asakawa T, Kan T, Fukuda H, Ohashi-Ito K. (2015) A negative feedback loop controlling bHLH complexes is involved in vascular cell division and differentiation in the root apical meristem. Curr. Biol. 25, 3144-3150.
    http://www.cell.com/current-biology/abstract/S0960-9822(15)01345-7
    Shinohara N, Kakegawa K, Fukuda H. (2015) Monoclonal antibody-based analysis of cell wall remodeling during xylogenesis. J Plant Res. 128: 975-986.
    http://www.ncbi.nlm.nih.gov/pubmed/26464036
    Kondo, Y., Fujita, T., Sugiyama, M., and Fukuda, H. (2015) A novel system for xylem cell differentiation in Arabidopsis thaliana. Mol. Plant, 8, 612-621
    http://www.sciencedirect.com/science/article/pii/S1674205214000264
    Shimizu, H., Araki, T. and *Endo, M. (2015) Photoperiod sensitivity of the Arabidopsis circadian clock is tissue-specific. Plant Signal. Behav.,. 10, e1010933
    http://www.tandfonline.com/doi/abs/10.1080/15592324.2015.1010933#.Vd_rJdwVjoo
    Kawamoto, N., Sasabe, M., Endo, M., Machida, Y., and *Araki, T. (2015) Calcium-dependent protein kinases responsible for the phosphorylation of a bZIP transcription factor FD crucial for the florigen complex formation. Scientific Reports, 5, 8341.
    Review papers
    Kondo, Y., Fukuda, H. (2015) The TDIF signaling network. Curr. Opin. Plant. Biol., 28, 106-10.
    http://www.sciencedirect.com/science/article/pii/S1369526615001508

Shinozaki Group

  • -2017-
    Original papers
    #Morimoto K, #Ohama N, Kidokoro S, Mizoi J, Takahashi F, Todaka D, Mogami J, Sato H, Qin F, Kim JS, Fukao Y, Fujiwara M, Shinozaki K, *Yamaguchi-Shinozaki K. (2017) BPM-CUL3 E3 ligase modulates thermotolerance by facilitating negative regulatory domain-mediated degradation of DREB2A in Arabidopsis. Proc. Natl. Acad. Sci. USA, in press.
    http://www.pnas.org/content/early/2017/09/14/1704189114.abstract
    #Sakuraba Y, #Kim EY, Han SH, Piao W, An G, Todaka D, Yamaguchi-Shinozaki K, *Paek NC. (2017) Rice Phytochrome-Interacting Factor-Like1 (OsPIL1) is involved in the promotion of chlorophyll biosynthesis through feed-forward regulatory loops. J. Exp. Bot., 68, 4103-4114.
    https://academic.oup.com/jxb/article/68/15/4103/3952689/Rice-PhytochromeInteracting-FactorLike1-OsPIL1-is
    Kidokoro S, Yoneda K, Takasaki H, Takahashi F, Shinozaki K, *Yamaguchi-Shinozaki K. (2017) Different cold-signaling pathways function in the responses to rapid and gradual decreases in temperature. Plant Cell, 29, 760-774.
    http://www.plantcell.org/content/29/4/760
    Todaka D, Zhao Y, Yoshida T, Kudo M, Kidokoro S, Mizoi J, Kodaira KS, Takebayashi Y, Kojima M, Sakakibara H, Toyooka K, Sato M, Fernie AR, Shinozaki K, *Yamaguchi-Shinozaki K. (2017) Temporal and spatial changes in gene expression, metabolite accumulation and phytohormone content in rice seedlings grown under drought stress conditions. Plant J., 90, 61-78.
    https://www.ncbi.nlm.nih.gov/pubmed/28019048
    Urano K, Maruyama K, Jikumaru Y, Kamiya Y, Yamaguchi-Shinozaki K, *Shinozaki K (2017) Analysis of plant hormone profiles in response to moderate dehydration stress. Plant J., 90, 17-36.
    https://www.ncbi.nlm.nih.gov/pubmed/27995695
    #Soma F, #Mogami J, Yoshida T, Abekura M, Takahashi F, Kidokoro S, Mizoi J, Shinozaki K, and *Yamaguchi-Shinozaki K. (2017) ABA-unresponsive SnRK2 protein kinases regulate mRNA decay under osmotic stress in plants, Nature Plants, 3, 16204.
    http://www.nature.com/articles/nplants2016204
    *Maruyama K, Ogata T, Kanamori N, Yoshiwara K, Goto S, Yamamoto Y, Tokoro Y, Noda C, Takaki Y, Urawa H, Iuchi S, Urano K, Yoshida T, Sakurai T, Kojima M, Sakakibara H, Shinozaki K, and Yamaguchi-Shinozaki K. (2017) Design of an optimal promoter involved in the heat-induced transcriptional pathway in Arabidopsis, soybean, rice, and maize. Plant J., 89, 671-680.
    https://www.ncbi.nlm.nih.gov/pubmed/27862521
    Kudo M, Kidokoro S, Yoshida T, Mizoi J, Todaka D, Fernie A, Shinozaki K, and *Yamaguchi-Shinozaki K. (2017) Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants. Plant Biotechnol J., 15, 458-471.
    https://www.ncbi.nlm.nih.gov/pubmed/27683092
    Masuta Y, Nozawa K, Takagi H, HYaegashi H, Tanaka K, Ito T, Saito H, Kobayashi H, Matsunaa W, Masuda S, Kato A, and *Ito H. (2017) Inducible transposition of a heat-activated retrotransposon in tissue culture. Plant cell physiol., 58, 375-384.
    https://www.ncbi.nlm.nih.gov/pubmed/28013279
  • -2016-
    Original papers
    Shimazaki T, Endo T, Kasuga M, Yamaguchi-Shinozaki K, Watanabe KN, *Kikuchi A. (2016) Evaluation of the yield of abiotic-stress-tolerant AtDREB1A transgenic potato under saline conditions in advance of field trials. Breed Sci., 66, 703-710.
    https://www.jstage.jst.go.jp/article/jsbbs/66/5/66_16054/_html
    Honna PT, Fuganti-Pagliarini R, Ferreira LC, Molinari MDC, Marin SRR, de Oliveira MCN, Farias JRB, Neumaier N, Mertz-Henning LM, Kanamori N, Nakashima K, Takasaki H, Urano K, Shinozaki K, Yamaguchi-Shinozaki K, Desidério JA, and *Nepomuceno AL.(2016)Molecular, physiological, and agronomical characterization, in greenhouse and in field conditions, of soybean plants genetically modified with AtGolS2 gene for drought tolerance. Mol Breeding, 36, 157.
    http://link.springer.com/article/10.1007/s11032-016-0570-z
    Sato H, Todaka D, Kudo M, Mizoi J, Kidokoro S, Zhao Y, Shinozaki K, and *Yamaguchi-Shinozaki K. (2016) The Arabidopsis transcriptional regulator DPB3-1 enhances heat stress tolerance without growth retardation in rice. Plant Biotechnol. J., 14, 1756-1767.
    http://www.ncbi.nlm.nih.gov/pubmed/26841113
    Ohama N, Kusakabe K, Mizoi J, Zhao H, Kidokoro S, Koizumi S, Takahashi F, Ishida T, Yanagisawa S, Shinozaki K, and *Yamaguchi-Shinozaki K. (2016) The transcriptional cascade in the heat stress response of Arabidopsis is strictly regulated at the expression levels of transcription factors. Plant Cell, 28, 181-201.
    http://www.plantcell.org/content/early/2015/12/29/tpc.15.00435.full.pdf+html
    Introduced in "In Brief"
    *Ito H., Kim JM, Matsunaga W, Saze H, Matsui A, Endo TA, Harukawa Y, Takagi H, Yaegashi H, Masuta Y, Masuda S, Ishida J, Tanaka M, Takahashi S, Morosawa T, Toyoda T, Kakutani T, Kato A, Seki M. (2016) A stress-Activated Transposon in Arabidopsis Induces transgenerational Abscisic Acid Insensitivity. Sci. Rep., in press.
    http://www.nature.com/articles/srep23181
    Masuda S, Nozawa K, Matsunaga W, Masuta Y, Kawabe A, Kato A, and *Ito H. (2016) Characterization of a heat-activated retrotransposon in natural accessions of Arabidopsis thaliana. Genes Genet. Syst., 91, 293-299.
    https://www.jstage.jst.go.jp/article/ggs/91/6/91_16-00045/_article
    Review papers
    #Ohama N, #Sato H, Shinozaki K, and *Yamaguchi-Shinozaki K. (2016) Transcriptional regulatory network of plant heat stress response. Trends Plant Sci., 22, 53-65.
    http://www.sciencedirect.com/science/article/pii/S1360138516301261
  • -2015-
    Original papers
    Takasaki H, Maruyama K, Takahashi F, Fujita M, Yoshida T, Nakashima K, Myouga F, Toyooka K, *Yamaguchi-Shinozaki K, and *Shinozaki K. (2015) SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 84, 1114-1123.
    http://onlinelibrary.wiley.com/doi/10.1111/tpj.13067/full
    Shida T, Fukuda A, Saito T, Ito H, and *Kato A. (2015) AtRBP1, which encodes an RNA-binding protein containing RNA-recognition motifs, regulates root growth in Arabidopsis thaliana. Plant Physiol. Bioch., 92, 62-70.
    http://www.sciencedirect.com/science/article/pii/S0981942815300103
    Matsunaga W, Ohama N, Tanabe N, Masuta Y, Masuda S, Mitani-Umeno N, *Yamaguchi-Shinozaki K, Ma JF, Kato A, and *Ito H. (2015) A small RNA mediated regulation of a stress-activated retrotransposon and the tissue specific transposition during the reproductive period in Arabidopsis. Front. Plant Sci., 6, 48 (12 pages).
    http://eprints.lib.hokudai.ac.jp/dspace/bitstream/2115/58270/3/FPLA_06_00048.pdf
    Review papers
    Yoshida T, Mogami J, and *Yamaguchi-Shinozaki K (2015) Omics Approaches Toward Defining the Comprehensive Abscisic Acid Signaling Network in Plants.
    Plant Cell Physiol., 56, 1043-1052.
    http://pcp.oxfordjournals.org/content/early/2015/04/25/pcp.pcv060.full.pdf+html

Kakutani Group

Shirasu Group