総合研究院　合成生物学研究部門

研究業績

2023年

原著論文

  1. Miyazaki, M., Nakabo, A., Nagano, Y., Nagamura, Y., Yanagihara, K., Ohki, R., Nakamura, Y., Fukami, K., Kawamoto, J., Umayahara, K., Sakamoto, M., Iwaya, K. and Yamaguchi, H.* (2023) Tissue factor-induced fibrinogenesis mediates cancer cell clustering and multiclonal peritoneal metastasis. Cancer Lett., 553, 215983 (11 pages).

    https://doi.org/10.1016/j.canlet.2022.215983

  2. Kato, S., Misumi, O., Maruyama, S., Nozaki, H., Tsujimoto-Inui, Y., Takusagawa, M., Suzuki, S., Kuwata, K., Noda, S., Ito, N., Okabe, Y., Sakamoto, T., Yagisawa, F., Matsunaga, T. M., Matsubayashi, Y., Yamaguchi, H., Kawachi, M., Kuroiwa, H., Kuroiwa, T.* and Matsunaga, S.* (2023) Genomic analysis of an ultrasmall freshwater green alga, Medakamo hakoo. Commun. Biol., 6, 89 (13 pages).

    https://www.nature.com/articles/s42003-022-04367-9

  3. Haan, K. D.#, Park, S. J.#, Nakamura, Y., Fukami, K. and Fisher, T. E.* (2023) Osmotically evoked PLCδ1-dependent translocation of ΔN-TRPV1 channels in rat supraoptic neurons. iScience, 26, 106258 (23 pages). #These authors equally contributed to this work.

    https://doi.org/10.1016%2Fj.isci.2023.106258

  4. Yokoi, K., Yasuda, Y., Kanbe, A., Imura, T.* and Aoki, S.* (2023) Development of wireless power-transmission-based photodynamic therapy for the induction of cell death in cancer cells by cyclometalated iridium(III) complexes. Molecules, 28, 1433 (14 pages).

    https://www.mdpi.com/1420-3049/28/3/1433

  5. Kesavan, M. P., Ravi, L., Balachandran, C., Thangadurai, T. D., Aoki, S., Webster, T. J. and Jegathalaprathaban, R.* (2023) Promising anticancer activity with high selectivity of DNA/plasma protein targeting new phthalazin-1(2H)-one heterocyclic scaffolds. J. Mol. Struct, 1274, 134423.

    https://doi.org/10.1016/j.molstruc.2022.134423

  6. Kasikuma, R.#, Nagano, M.#, Shimamura, H.#, Nukaga, K., Katsumata, I., Toshima, J. Y. and Toshima, J.* (2023) Role of phosphatidylserine in the localization of cell surface membrane proteins in yeast. Cell Struct. Funct., 48, 19-30. #These authors equally contributed to this work.

    https://www.jstage.jst.go.jp/article/csf/48/1/48_22081/_html/

  7. Hanazawa, K., Nakamura, Y., Nguyen, N. H., Hagihara, N., Nguyen, P. T., Le, T. H. T. and Shimizu, K.* (2023) Comparison of secondary metabolite production in the sterigmatocystin and austinol cluster deletion strains in Aspergillus nidulans. JSM Mycotoxins, in press.

    https://doi.org/10.2520/myco.73-2-1

  8. Temman, H.#, Sakamoto, T.#, Ueda, M., Sugimoto, K., Migihashi, M., Yamamoto, K., Tsujimoto-Inui, Y., Sato, H., Shibuta, M. K., Nishino, N., Nakamura, T., Shimada, H., Taniguchi, Y. Y., Takeda, S., Aida, M., Suzuki, T., Seki, M. and Matsunaga, S.* (2023) Histone deacetylation regulates de novo shoot regeneration. PNAS Nexus, 2, pdad002 (12 pages). #These authors equally contributed to this work.

    https://doi.org/10.1093/pnasnexus/pgad002

    9.  

総説論文

  1. Bozieva, A. M., Khasimov, M. K., Voloshin, R. A., Sinetova, M. A., Kupriyanova, E. V., Zharmukhamedov, S. K., Dunikov, D. O., Tsygankov, A. A., Tomo, T.* and Allakhverdiev, S. I.* (2023) New cyanobacterial strains for biohydrogen production. Int. J. Hydrogen Energ., 48, 7569-7581.

    https://doi.org/10.1016/j.ijhydene.2022.11.198

  2. Ueda, J., Kazama, Y., Abe, T. and Murai, K.* (2023) Characterization of late heading 1, a heavy-ion beam irradiation-induced mutant in einkorn wheat (Triticum monococcum) that suppresses an early-flowering phenotype in plants with deletion of PHYTOCLOCK 1. Cytologia, 88, 61–67.

    https://www.jstage.jst.go.jp/article/cytologia/88/1/88_D-22-00086/_html

 

著書

  1. 荒添貴之 (2023) 第5節 第1項 バクテリアへのゲノム編集技術導入と課題解決アプローチ, ゲノム編集技術 〜実験上のポイント／産業利用に向けた研究開発動向と安全性周知 (情報機構)

 

2022年

原著論文

  1. Nagahata, Y., Masuda, K., Nishimura, Y, Ikawa, T., Kawaoka, S., Kitawaki, T., Nannya, Y., Ogawa, S., Suga, H., Satou, Y., Takaori-Kondo, A. and Kawamoto, H.* (2022) Tracing the evolutionary history of blood cells to the unicellular ancestor of animals. Blood, 140, 2611–2625.

    https://doi.org/10.1182/blood.2022016286

  2. Takano, J., Ito, S., Dong, Y., Sharif, J., Nakajima-Takagi, Y., Umeyama, T., Han, Y. W., Isono, K., Kondo, T., Iizuka, Y., Miyai, T., Koseki, Y., Ikegaya, M., Sakihara, M., Nakayama, M., Ohara, O., Hasegawa, Y., Hashimoto, K., Arner, E., Klose, R. J., Iwama, A., Koseki, H.* and Ikawa, T.* (2022) PCGF1-PRC1 links chromatin repression with DNA replication during hematopoietic cell lineage commitment. Nature Commun., 13, 7159 (19 pages).

    https://www.nature.com/articles/s41467-022-34856-8

  3. Hu, M., Yeh, Y. H., Munakata, Y., Abe, H., Sakashita, A., Maezawa, S., Vidal, M., Koseki, H., Hunter, N, Schultz, R. M. and Namekawa, S. H.* (2022) PRC1-mediated epigenetic programming is required to generate the ovarian reserve. Nature Commun., 13, 4510 (10 pages).

    https://www.nature.com/articles/s41467-022-31759-6

  4. Li, A., Mitsunobu, H., Yoshioka, S., Suzuki, T., Kondo, A. and Nishida, K.* (2022) Cytosine base editing systems with minimized off-target effect and molecular size. Nature Commun., 13, 4531 (8 pages).

    https://www.nature.com/articles/s41467-022-32157-8

  5. Kanemaru, K.#, Shimozawa, M.#, Kitamata, M., Furuishi, R., Kayano, H., Sukawa, Y., Chiba, Y., Fukuyama, T., Hasegawa, J., Nakanishi, H., Kishimoto, T., Tsujita, K., Tanaka, K., Itoh, T., Sasaki, J., Sasaki, T., Fukami, K.* and Nakamura, Y.* (2022) Plasma membrane phosphatidylinositol (4,5)-bisphosphate is critical for determination of epithelial characteristics. Nature Commun., 13, 2347 (15 pages). #These authors equally contributed to this work.

    https://www.nature.com/articles/s41467-022-30061-9

  6. Sakamoto, T.*#, Sakamoto, Y.#, Grob, S., Slane, D., Yamashita, T., Ito, N., Oko, Y., Sugiyama, T., Higaki, T., Hasezawa, S., Tanaka, M., Matsui, A., Seki, M., Suzuki, T., Grossniklaus, U. and Matsunaga, S.* (2022) Two-step regulation of centromere distribution by condensin II and the nuclear envelope proteins. Nature Plants, 8, 940-953. #These authors equally contributed to this work.

    https://www.nature.com/articles/s41477-022-01200-3

  7. Jin, J., Ogawa, T., Hojo, N., Kryukov, K., Shimizu, K., Ikawa, T., Imanishi, T., Okazaki, T. and Shiroguchi, K.* (2022) Robotic data acquisition with deep learning enables cell image-based prediction of transcriptomic phenotypes. Proc. Natl. Acad. Sci. U.S.A., 120, e2210283120 (9 pages).

    https://www.pnas.org/doi/10.1073/pnas.2210283120

  8. Kim, J. S.*, Sakamoto, Y., Takahashi, F., Shibata, M., Urano, K., Matsunaga, S., Yamaguchi-Shinozaki, K. and Shinozaki, K.* (2022) Arabidopsis TBP-ASSOCIATED FACTOR 12 ortholog NOBIRO6 controls root elongation with unfolded protein response cofactor activity. Proc. Natl. Acad. Sci. U.S.A., 119, e2120219119 (9 pages).

    https://doi.org/10.1073/pnas.2120219119

  9. Kazama, Y.*, Kitoh, M., Kobayashi, T., Ishii, K., Krasovec, M., Yasui, Y., Abe, T., Kawano, S. and Filatov, D. A.* (2022) A CLAVATA3-like gene acts as a gynoecium suppression function in white campion. Mol. Biol. Evol., 39, msac195 (13 pages).

    https://doi.org/10.1093/molbev/msac195

  10. Enshoji, M.#, Miyano, Y.#, Yoshida, N.#, Nagano, M., Watanabe, M., Kunihiro, M., Siekhaus, D. E., Toshima, J. Y.* and Toshima, J.* (2022) Eps15/Pan1p is a master regulator of the late stages of the endocytic pathway. J. Cell Biol., 221, e202112138 (21 pages). #These authors equally contributed to this work.

    https://doi.org/10.1083/jcb.202112138

  11. Kashojiya, S.#, Lu, Y.#, Takayama, M., Komatsu, H., Minh, L. H. T., Nishida, K., Shirasawa, K., Miura, K., Nonaka, S., Masuda, J., Kondo, A., Ezura, H.* and Ariizumi, T.* (2022) Modification of tomato breeding traits and plant hormone signaling by Target-AID, the genome-editing system inducing efficient nucleotide substitution. Hortic. Res., 9, uhab004 (15 pages). #These authors equally contributed to this work.

    https://academic.oup.com/hr/article/doi/10.1093/hr/uhab004/6511229

  12. Hunziker, J., Nishida, K., Kondo, A., Ariizumi, T. and Ezura, H.* (2022) Phenotypic characterization of high carotenoid tomato mutants generated by the Target-AID base-editing technology. Front. Plant Sci., 13, 848560 (14 pages).

    https://www.frontiersin.org/articles/10.3389/fpls.2022.848560/full

  13. Ding, X., Zhang, X., Paez-Valencia, J., McLoughlin, F., Reyes, F. C., Morohashi, K., Grotewold, E., Vierstra, R. D. and Otegui, M. S.* (2022) Microautophagy mediates vacuolar delivery of storage proteins in maize aleurone cells. Front. Plant Sci., 13, 833612 (23 pages).

    https://www.frontiersin.org/articles/10.3389/fpls.2022.833612/full

  14. Sakamoto, Y., Ishimoto, A., Sakai, Y., Sato, M., Nishihama, R., Abe, K., Sano, Y., Furuichi, T., Tsuji, H., Kohchi, T. and Matsunaga, S.* (2022) Improved clearing method contributes to deep imaging of plant organs. Commun. Biol., 5, 12 (12 pages).

    https://www.nature.com/articles/s42003-021-02955-9

  15. Yamaguchi, K., Yokoi, K., Umezawa, M., Tsuchiya, K., Yamada, Y. and Aoki, S.* (2022) Design, synthesis, and anticancer activity of triptycene-peptide hybrids that induce paraptotic cell death in cancer cells. Bioconjug. Chem., 33, 691-717.

    https://pubs.acs.org/doi/full/10.1021/acs.bioconjchem.2c00076

  16. Takenaka, Y., Tanaka, R., Kitabatake, K., Kuramochi, K., Aoki, S. and Tsukimoto, M.* (2022) Profiling differential effects of 5 selective serotonin reuptake inhibitors on TLRs-dependent and -independent IL-6 production in immune cells identifies fluoxetine as preferred anti-inflammatory drug candidate. Front. Pharmacol., 13, 874375 (18 pages).

    https://www.frontiersin.org/articles/10.3389/fphar.2022.874375/full

  17. Shimizu, D.*#, Taniue, K.*#, Matsui, Y., Haeno, H., Araki, H., Miura, F., Fukunaga, M., Shiraishi, K., Miyamoto, Y., Tsukamoto, S., Komine, A., Kobayashi, Y., Kitagawa, A., Yoshikawa, Y., Sato, K., Saito, T., Ito, S., Masuda, T., Niida, A., Suzuki, M., Baba, H., Ito, T., Akimitsu, N., Kodera, Y. and Mimori, K. (2022) Pan-cancer methylome analysis for cancer diagnosis and classification of cancer cell of origin. Cancer Gene Ther., 29, 428-436. #These authors equally contributed to this work.

    https://doi.org/10.1038/s41417-021-00401-w

  18. Shinkado, S.#, Saito, H.#, Yamazaki, M.#, Kotera, S., Arazoe, T.*, Arie, T.* and Kamakura, T.* (2022) Genome editing using a versatile vector‑based CRISPR/Cas9 system in Fusarium species. Sci. Rep., 12, 16243 (9 pages). #These authors equally contributed to this work.

    https://www.nature.com/articles/s41598-022-20697-4

  19. Oya, S., Tonegawa, S., Nakagawa, H., Habe, H. and Furuya, T.* (2022) Isolation and characterization of microorganisms capable of cleaving the ether bond of 2-phenoxyacetophenone. Sci. Rep., 12, 2874 (9 pages).

    https://www.nature.com/articles/s41598-022-06816-1

  20. Kawana, H., Miwa, T., Honda, Y. and Furuya, T.* (2022) Sustainable approach for peroxygenase-catalyzed oxidation reactions using hydrogen peroxide generated from spent coffee grounds and tea leaf residues. ACS Omega, 7, 20259-20266.

    https://pubs.acs.org/doi/10.1021/acsomega.2c02186

  21. Ishii, R.#, Fukui, A.#, Sakiyama, Y.#, Kitsukawa, S., Futami, A., Mochizuki, T., Nagano, M., Toshima, J. and Abe, F.* (2022) Substrate-induced differential degradation and partitioning of the two tryptophan permeases Tat1 and Tat2 into eisosomes in Saccharomyces cerevisiae. Biochim. Biophys. Acta Biomembr., 1864, 183858 (16 pages). #These authors equally contributed to this work.

    https://doi.org/10.1016/j.bbamem.2021.183858

  22. Ogawa, T., Ochiai, K., Iwata, T., Ikawa, T., Tsuzuki, T., Shiroguchi, K.* and Takahashi, K.* (2022) Different cell imaging methods did not significantly improve immune cell image classification performance. PLOS ONE, 17, e0262397 (11 pages).

    https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0262397

  23. Saga, Y.*, Tanaka, A., Yamashita, M., Shinoda, T., Tomo, T. and Kimura, Y. (2022) Spectral properties of chlorophyll f in the B800 cavity of light-harvesting complex 2 from the purple photosynthetic bacterium Rhodoblastus acidophilus. Photochem. Photobiol., 98, 169-174.

    https://onlinelibrary.wiley.com/doi/abs/10.1111/php.13491

  24. Satoh, H., Ochi, S., Mizuno, K., Saga, Y., Ujita, S., Toyoda, M., Nishiyama, Y., Tada, K., Matsushita, Y., Deguchi, Y., Suzuki, K., Tanaka, Y., Ueda, H., Inaba, T., Hosoi, Y., Morita, A. and Aoki, S.* (2022) Design, synthesis and biological evaluation of 2-pyrrolone derivatives as radioprotectors. Bioorg. Med. Chem., 67, 116764 (19 pages).

    https://doi.org/10.1016/j.bmc.2022.116764

  25. Yokoi, K., Yamaguchi, K., Umezawa, M., Tsuchiya, K. and Aoki, S.* (2022) Induction of paraptosis by cyclometalated iridium complex-peptide hybrids and CGP37157 via a mitochondrial Ca2+ overload triggered by membrane fusion between mitochondria and the endoplasmic reticulum. Biochemistry, 61, 639-655.

    https://pubs.acs.org/doi/full/10.1021/acs.biochem.2c00061

  26. Kurakado, S.*, Matsumoto, Y., Yamada, T., Shimizu, K., Wakasa, S. and Sugita, T. (2022) Tacrolimus inhibits stress responses and hyphal formation via the calcineurin signaling pathway in Trichosporon asahii. Microbiol. Immunol., 67, 49-57.

    https://doi.org/10.1111/1348-0421.13039

  27. Nozawa, D., Matsuyama, A. and Furuya, T.* (2022) Biocatalytic synthesis and evaluation of antioxidant and antibacterial activities of hydroxyequols. Bioorg. Med. Chem. Lett., 73, 128908.

    https://doi.org/10.1016/j.bmcl.2022.128908

  28. Nishijima, R., Sanjaya, A., Shinoyama, H. and Kazama, Y.* (2022) Touch-induced transcriptional changes in flower buds of a non-model horticultural plant Dianthus hybrida. Horticulturae, 8, 918 (6 pages).

    https://www.mdpi.com/2311-7524/8/10/918

  29. Ueda, H., Suzuki, M., Sakurai, Y., Tanaka, T. and Aoki, S.* (2022) Design, synthesis and biological evaluation of boron-containing macrocyclic polyamine dimers and their zinc(ii) complexes for boron neutron capture therapy. Eur. J. Inorg. Chem., 2022, e202100949 (24 pages).

    https://doi.org/10.1002/ejic.202100949

  30. Notomi, Y., Kazawa, T., Maezawa, S., Kanzaki, R. and Haupt, S. S.* (2022) Use of visual information by ant species occurring in similar urban anthropogenic environments. Zoolog. Sci., 39, 529-544.

    https://doi.org/10.2108/zs220035

  31. Nguyen, P. T., Nguyen, N. H., Kang, Y. Q. and Shimizu, K.* (2022) Cryptococcus neoformans MET5 gene is not essential for virulence in the silkworm infection model. Med. Mycol. J., 63, 77-80.

    https://www.jstage.jst.go.jp/article/mmj/63/3/63_21-00023/_article

  32. Sakashita, A., Takeuchi, C., Maezawa, S. and Namekawa, S. H.* (2022) Bioinformatics pipelines for identification of super-enhancers and 3D chromatin contacts. Methods Mol. Biol., 2577, 123-146.

    https://doi.org/10.1007/978-1-0716-2724-2_9

  33. Tatara, M., Ikeda, T., Namekawa, S. H.* and Maezawa, S.* (2022) ATAC-seq analysis of accessible chromatin: from experimental steps to data analysis. Methods Mol. Biol., 2577, 65-81.

    https://doi.org/10.1007/978-1-0716-2724-2_5

    34.  

総説論文

  1. Allakhverdiev, E. S., Khabatova, V. V., Kossalbayev, B. D., Zadneprovskaya, E. V., Rodnenkov, O. V., Martynyuk, T. V., Maksimov, G. V., Alwasel, S., Tomo, T. and Allakhverdiev, S. I.* (2022) Raman spectroscopy and its modifications applied to biological and medical research. Cells, 11, 386 (25 pages).

    https://www.mdpi.com/2073-4409/11/3/386/htm

  2. Rodionova, M. V., Bozieva, A. M., Zharmukhamedov, S. K., Leong, Y. K., Chi-Wei Lan, J., Veziroglu, A., Veziroglu, T. N., Tomo, T., Chang, J. S. and Allakhverdiev, S. I.* (2022) A comprehensive review on lignocellulosic biomass biorefinery for sustainable biofuel production. Int. J. Hydrogen Energ., 47, 1481-1498.

    https://doi.org/10.1016/j.ijhydene.2021.10.122

  3. Hirano, T.*, Kazama, Y., Kunitake, H. and Abe, T. (2022) Mutagenic effects of heavy-ion beam irradiation to plant genome. Cytologia, 87, 3–6.

    https://www.jstage.jst.go.jp/article/cytologia/87/1/87_870101/_article/

  4. Nguyen, N. H., Tamura, T. and Shimizu, K.* (2022) Draft genome sequence of Purpureocillium takamizusanense, a potential bioinsecticide. Microbiol. Resour. Announc., 11, e0026822 (3 pages).

    https://journals.asm.org/doi/10.1128/mra.00268-22

  5. 風間裕介*, 畑下昌範, 木元久, 櫻井明彦 (2022) イオンビームを用いた微生物の品種改良, アグリバイオ, 6, 29-33.
  6. 篠田稔行, 加藤公児, 長尾遼, 秋本誠志, 鈴木健裕, 堂前直, 沈建仁, 秋田総理, 宮崎直幸, 鞆達也* (2022) クロロフィルfを結合した光化学系Iの構造機能相関, 光合成研究, 32, 87–93.

 

著書

  1. Nakamura, Y. (2022) Chapter 8: Phospholipid signaling, lipase. In ”Plasma Membrane Shaping” edited by Suetsugu, S. Elsevier, 105-118.

    https://shop.elsevier.com/books/plasma-membrane-shaping/bilbow/978-0-323-89911-6

  2. Nagano, M., Toshima, J. Y. and Toshima, J. (2022) Chapter 14: Membrane shaping for clathrin-coated pits and endocytosis. In ”Plasma Membrane Shaping” edited by Suetsugu, S. Elsevier.

    https://shop.elsevier.com/books/plasma-membrane-shaping/bilbow/978-0-323-89911-6

  3. Aoki, S.*, Yokoi, Y., Hisamatsu, Y., Balachandran, C., Tamura, Y. and Tanaka, T. (2022) Post-complexation functionalization of cyclometalated iridium(iii) complexes and applications to biomedical and material sciences, In ”Topics in Current Chemistry vol. 380” edited by Lo, K. K.-W. and Leung, P. K.-K. Springer, 155-197.

    https://doi.org/10.1007/s41061-022-00401-w

  4. Aoki, S.*, Ueda, H., Tanaka, T., Itoh, T., Suzuki, M. and Sakurai, Y. (2022) Design, synthesis, and biological applications of boron-containing polyamine and sugar derivatives, In ”Characteristics and Applications of Boron” edited by Wongchoosuk, C. IntechOpen, 83-105.

    https://www.intechopen.com/chapters/82908

  5. 木野邦器, 古屋俊樹 (2022) 第3章 3-4 酵素探索・改良技術, 日本生物工学会100年史 (日本生物工学会), 39-41.
  6. 古屋俊樹, 朽津和幸 (2022) 第1編 7章 4節 植物の免疫システムを活性化する微生物の簡便な評価手法の開発, バイオスティミュラントハンドブック (エヌ・ティー・エス), 209-215.

 

2021年

原著論文

  1. Yagi, N., Kato, T., Matsunaga, S., Ehrhardt, D. W., Nakamura, M.* and Hashimoto, T.* (2021) An anchoring complex recruits katanin for microtubule severing at the plant cortical nucleation sites. Nature Commun., 12, 3687 (14 pages).

    https://www.nature.com/articles/s41467-021-24067-y

  2. Matsuo, T., Isosaka, T., Hayashi, Y., Tang, L., Doi, A., Yasuda, A., Hayashi, M., Lee, C. Y., Cao, L., Kutsuna, N., Matsunaga, S., Matsuda, T., Yao, I., Setou, M., Kanagawa, D., Higasa, K., Ikawa, M., Liu, Q.*, Kobayakawa, R.* and Kobayakawa, K.* (2021) Thiazoline-related innate fear stimuli orchestrate hypothermia and anti-hypoxia via sensory TRPA1 activation. Nature Commun., 12, 2074 (17 pages).

    https://www.nature.com/articles/s41467-021-22205-0

  3. Itoh, R. D.*, Nakajima, K. P., Sasaki, S., Ishikawa, H., Kazama, Y., Abe, T. and Fujiwara, M. T. (2021) TGD5 is required for normal morphogenesis of non-mesophyll plastids, but not mesophyll chloroplasts, in Arabidopsis. Plant J., 107, 237-255.

    https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.15287

  4. Tojo, H., Nakamura, A., Ferjani, A., Kazama, Y., Abe, T. and Iida, H.* (2021) A method enabling comprehensive isolation of Arabidopsis mutants exhibiting unusual root mechanical behavior. Front. Plant Sci., 12, 646404 (8 pages).

    https://www.frontiersin.org/articles/10.3389/fpls.2021.646404/full

  5. Shibuta, M. K., Sakamoto, T., Yamaoka, T., Yoshikawa, M., Kasamatsu, S., Yagi, N., Fujimoto, S., Suzuki, T., Uchino, S., Sato, Y., Kimura, H. and Matsunaga, S.* (2021) A live imaging system to analyze spatiotemporal dynamics of RNA polymerase II modification in Arabidopsis thaliana. Commun. Biol., 4, 580 (10 pages).

    https://www.nature.com/articles/s42003-021-02106-0

  6. Vu, B. V.#, Nguyen, Q.#, Kondo-Takeoka, Y., Murata, T., Kadotani, N., Nguyen, G. T., Arazoe, T., Ohsato, S. and Nakayashiki, H.* (2021) Copy number-dependent DNA methylation of the Pyricularia oryzae MAGGY retrotransposon is triggered by DNA damage. Commun. Biol., 4, 351 (12 pages). #These authors equally contributed to this work.

    https://www.nature.com/articles/s42003-021-01836-5

  7. Yoshida, N., Ogura, I., Nagano, M., Ando, T., Toshima, J. Y.* and Toshima, J.* (2021) Cooperative regulation of endocytic vesicle transport by yeast Eps15-like protein Pan1p and epsins. J. Biol. Chem., 297, 101254 (10 pages).

    https://www.jbc.org/article/S0021-9258(21)01057-7/fulltext

  8. Yuan, S.#, Kawasaki, S.#, Abdellatif, I. M. Y., Nishida, K., Kondo, A., Ariizumi, T., Ezura, H. and Miura, K.* (2021) Efficient base editing in tomato using a highly expressed transient system. Plant Cell Rep., 40, 667-676. #These authors equally contributed to this work.

    https://link.springer.com/article/10.1007/s00299-021-02662-z

  9. Kawaguchi, K., Takei-Hoshi, R., Yoshikawa, I., Nishida, K., Kobayashi, M., Kusano, M., Lu, Y., Ariizumi, T., Ezura, H., Otagaki, S., Matsumoto, S. and Shiratake, K.* (2021) Functional disruption of cell wall invertase inhibitor by genome editing increases sugar content of tomato fruit without decrease fruit weight. Sci. Rep., 11, 21534 (12 pages).

    https://www.nature.com/articles/s41598-021-00966-4

  10. Kurokawa, M. Nakano, M., Kitahata, N, Kuchitsu, K. and Furuya, T.* (2021) An efficient direct screening system for microorganisms that activate plant immune responses based on plant-microbe interactions using cultured plant cells. Sci. Rep., 11, 7396 (14 pages).

    https://www.nature.com/articles/s41598-021-86560-0

  11. Nhat, V. Q., Kazama, Y., Ishii, K., Ohbu, S., Kunitake, H., Abe, T. and Hirano, T.* (2021) Double mutant analysis with the large flower mutant, ohbana1, to explore the regulatory network controlling the flower and seed sizes in Arabidopsis thaliana. Plants, 10, 1881 (13 pages).

    https://www.mdpi.com/2223-7747/10/9/1881/htm

  12. Sanjaya, A.#, Muramatsu, R.#, Sato, S., Suzuki, M., Sasaki, S., Ishikawa, H., Fujii, Y., Asano, M., Itoh, R. D., Kanamaru, K., Ohbu, S., Abe, T., Kazama, Y. and Fujiwara, M. T.* (2021) Arabidopsis EGY1 is critical for chloroplast development in leaf epidermal guard cells. Plants, 10, 1254 (21 pages). #These authors equally contributed to this work.

    https://www.mdpi.com/2223-7747/10/6/1254/htm

  13. Sanjaya, A., Kazama, Y.*, Ishii, K., Muramatsu, R., Kanamaru, K., Ohbu, S., Abe, T. and Fujiwara, M. T.* (2021) An Argon-ion-induced pale green mutant of Arabidopsis exhibiting rapid disassembly of mesophyll chloroplast grana. Plants, 10, 848 (25 pages).

    https://www.mdpi.com/2223-7747/10/5/848/htm

  14. Nguyen, P. T., Toh-e, A., Nguyen, N. H., Imanishi-Shimizu, Y., Watanabe, A., Kamei, K. and Shimizu, K.* (2021) Identification and characterization of a sulfite reductase gene and new insights regarding the sulfur-containing amino acid metabolism in the basidiomycetous yeast Cryptococcus neoformans. Curr. Genet., 67, 115-128.

    https://link.springer.com/article/10.1007/s00294-020-01112-9

  15. Kohga, H., Saito, Y., Kanamaru, M., Uchiyama, J. and Ohta, H.* (2021) The lack of the cell division protein FtsZ induced generation of giant cells under acidic stress in cyanobacterium Synechocystis sp. PCC6803. Photosynth. Res., 150, 343-356.

    https://link.springer.com/article/10.1007%2Fs11120-020-00792-1

  16. Ishida, A. and Furuya, T.* (2021) Diversity and characteristics of culturable endophytic bacteria from Passiflora edulis seeds. MicrobiologyOpen, 10, e1226 (13 pages).

    https://doi.org/10.1002/mbo3.1226

  17. Le, T. H. T., Le, T. N., Yoshimi, A., Abe, K., Imanishi-Shimizu, Y. and Shimizu, K.* (2021) Hyperosmotic medium partially restores the growth defect and the impaired production of sterigmatocystin of an Aspergillus nidulans ΔpmtC mutant in a HogA-independent manner. FEMS Microbiol. Lett., 368, fnab127.

    https://doi.org/10.1093/femsle/fnab127

  18. Imanishi-Shimizu, Y.*, Kamogawa, Y., Shimada, Y. and Shimizu, K. (2021) A capsule-associated gene of Cryptococcus neoformans, CAP64, is involved in pH homeostasis. Microbiology, 167, 001029 (11 pages).

    https://www.microbiologyresearch.org/content/journal/micro/10.1099/mic.0.001029

  19. Jebiti, H., Tamura, Y., Yokoi, K., Balachandran, C., Umezawa, M., Tsuchiya, K., Yamada, Y. and Aoki, S.* (2021) Synthesis and anticancer properties of bis- and mono (cationic peptide) hybrids of cyclometalated iridium (III) complexes: effect of the number of peptide units on anticancer activity. Eur. J. Inorg. Chem., 2021, 1796-1814.

    https://chemistry-europe.onlinelibrary.wiley.com/doi/full/10.1002/ejic.202100154

  20. Rahman, A. B., Okamoto, H., Miyazawa, Y. and Aoki, S.* (2021) Design and synthesis of supramolecular phosphatases formed from a bis (Zn2+-cyclen) complex, barbital-crown-K+ conjugate and Cu2+ for the catalytic hydrolysis of phosphate monoester. Eur. J. Inorg. Chem., 2021, 1213-1223.

    https://chemistry-europe.onlinelibrary.wiley.com/doi/full/10.1002/ejic.202001009

  21. Kato, Y.#, Inoue, T.#, Furuyama, Y., Ohgane, K., Sadaie, M. and Kuramochi, K.* (2021) Deoxygenation of tertiary and secondary alcohols with sodium borohydride, trimethylsilyl chloride, and potassium iodide in acetonitrile. Tetrahedron Lett., 86, 153519. #These authors equally contributed to this work.

    https://doi.org/10.1016/j.tetlet.2021.153519

  22. Furuyama, Y., Motoyama, T.*, Nogawa, T., Hayashi, T., Hirota, H., Kioyota, H., Kamakura, T. and Osada, H.* (2021) Controlling the production of phytotoxin pyriculol in Pyricularia oryzae by aldehyde reductase. Biosci. Biotech. Biochem., 85, 126-133.

    https://doi.org/10.1093/bbb/zbaa035

  23. Kawakubo, H.#, Kamisuki, S.*#, Suzuki, K., Izaguirre-Carbonell, J., Saito, S., Murata, H., Tanabe, A., Hongo, A., Murakami, H., Matsunaga, S., Sakaguchi, K., Sahara, H., Sugawara, F. and Kuramochi, K. (2021) SQAP, an acyl sulfoquinovosyl derivative, suppresses expression of histone deacetylase and induces cell death of cancer cells under hypoxic conditions. Biosci. Biotech. Biochem., 85, 85-91. #These authors equally contributed to this work.

    https://doi.org/10.1093/bbb/zbaa015

  24. Kobayashi, T., Takahashi, M., Nishijima, R., Sugiyama, R., Ishii, K., Kawano, S. and Kazama, Y.* (2021) Effective chromosomal preparation protocol for the dioecious plant Silene latifolia. Cytologia, 86, 323-328.

    https://www.jstage.jst.go.jp/article/cytologia/86/4/86_D-21-00094/_html/

  25. Hashimoto. K, Kazama, Y., Ichida, H., Abe, T. and Murai, K.* (2021) Einkorn wheat (Triticum monococcum) mutant extra-early flowering 4, generated by heavy-ion beam irradiation, has a deletion of the LIGHT-REGULATED WD1 homolog. Cytologia, 86, 297-302.

    https://www.jstage.jst.go.jp/article/cytologia/86/4/86_D-21-00066/_html/

  26. Aonuma, W., Kawamoto, H., Kazama, Y., Ishii, K., Abe, T. and Kawano, S.* (2021) Male/female trade-off in hermaphroditic Y-chromosome deletion mutants of the dioecious plant Silene latifolia. Cytologia, 86, 329-338.

    https://www.jstage.jst.go.jp/article/cytologia/86/4/86_D-21-00062/_html/

  27. Takeshita, T.*, Takita, K., Ishii, K., Kazama, Y., Abe, T. and Kawano, S. (2021) Robust mutants isolated through heavy-ion beam irradiation and endurance screening in the green alga Haematococcus pluvialis. Cytologia, 86, 283-289.

    https://www.jstage.jst.go.jp/article/cytologia/86/4/86_D-21-00109/_html/

  28. Matsuta, A.#, Mayuzumi, T.#, Katano, H., Hatashita, M., Takagi, K., Hayashi, Y., Abe, T., Murai, K. and Kazama, Y.* (2021) The effect of heavy-ion beams with high linear energy transfer on mutant production in M1 generation of Torenia fournieri. Cytologia, 86, 317-322. #These authors equally contributed to this work.

    https://www.jstage.jst.go.jp/article/cytologia/86/4/86_D-21-00099/_html/

  29. Negishi, K. and Morohashi, K.* (2021) Comprehensive transcriptional analysis reveals gene-specific transcriptional variations in a seed plant, Arabidopsis thaliana. ICAART, 1, 585-590.

    https://www.insticc.org/node/TechnicalProgram/icaart/2021/presentationDetails/104239

    30.  

総説論文

  1. Nishida, K.* and Kondo, A. (2021) Transversion expansion of base editing. CRISPR J., 4, 462-463.

    https://www.liebertpub.com/doi/10.1089/crispr.2021.29134.kni

  2. Fujiwara, Y., Matsunaga, S. and Sakamoto, T.* (2021) Next generation sequence-based technologies for analyzing DNA strand breaks. Cytologia, 86, 3-9.

    https://www.jstage.jst.go.jp/article/cytologia/86/1/86_860103/_html/

  3. Aoki, S.*, Rahman, A. B., Hisamatsu, Y., Miyazawa, Y., Zulkefeli, M., Saga, Y. and Tanaka, T. (2021) Development of metallosupramolecular phosphatases based on the combinatorial self-assembly of metal complexes and organic building blocks for the catalytic hydrolysis of phosphate monoesters. Results Chem., 3, 100133 (20 pages).

    https://doi.org/10.1016/j.rechem.2021.100133

  4. 青木伸, 横井健汰, Balachandran, C., 久松洋介 (2021) Post-complexation functionalizationによるシクロメタレート型イリジウム (III) 錯体の機能化と生命科学および材料科学への応用 ― 金属錯体をビルディングブロックとする機能性分子の創製 ―, 有機合成化学協会誌, 79, 1113-1124.

    https://www.jstage.jst.go.jp/article/yukigoseikyokaishi/79/12/79_1113/_article/-char/ja/

  5. 太田尚孝, 内山純爾 (2021) バイオフィルムを用いた物質生産プラットフォームの開発に向けて, 科学フォーラム, 426, 6-9.
  6. 伊川友活 (2021) 転写因子とマクロファージ分化, 臨床免疫・アレルギー科, 75, 699-706.

    7.  

著書

  1. Tomo, T. and Allakhverdiev, S. I. (2021) Chlorophyll Species and Their Functions in the Photosynthetic Energy Conversion. In “Photosynthesis: Molecular Approaches to Solar Energy Conversion” edited by Shen, J. R., Satoh, K. and Allakhverdiev, S. I. Springer, 133-161.
  2. Arazoe, T. (2021) Chapter 12: Genome editing using CRISPR/Cas9 system in the rice blast fungus. In “Magnaporthe Oryzae, Methods in Molecular Biology” edited by Jacob, S. Humana Press, 149–160.
  3. 鞆達也 (2021) 第1章 光合成生物, 光合成 (朝倉書店)
  4. 青木伸 (2021) 薬学演習II (スタンダード薬学シリーズII-9) ：基礎科学 (東京化学同人), 195-200, 287-291, 479-480.

 

2020年

原著論文

  1. Sakata, R. C.#, Ishiguro, S.#, Mori, H.#, Tanaka, M., Tatsuno, K., Ueda, H., Yamamoto, S., Seki, M., Masuyama, N., Nishida, K., Nishimasu, H., Arakawa, K., Kondo, A., Nureki, O., Tomita, M., Aburatani, H. and Yachie, N.* (2020) Base editors for simultaneous introduction of C-to-T and A-to-G mutations. Nature Biotechnol., 38, 865-869. #These authors equally contributed to this work.

    "https://www.nature.com/articles/s41587-020-0509-0

  2. Watanabe, A., Miyake, K., Nordlund, J., Syvänen, A. C., van der Weyden, L., Honda, H., Yamasaki, N., Nagamachi, A., Inaba, T., Ikawa, T., Urayama, K. Y., Kiyokawa, N., Ohara, A., Kimura, S., Kubota, Y., Takita, J., Goto, H., Sakaguchi, K., Minegishi, M., Iwamoto, S., Shinohara, T., Kagami, K., Abe, M., Akahane, K., Goi, K., Sugita, K. and Inukai, T.* (2020) Association of aberrant ASNS imprinting with asparaginase sensitivity and chromosomal abnormality in childhood BCP-ALL. Blood, 136, 2319-2333.

    https://doi.org/10.1182/blood.2019004090

  3. Sakamoto, Y., Sato, M., Sato, Y., Harada, A., Suzuki, T., Goto, C., Tamura, K., Toyooka, K., Kimura, H., Ohkawa, Y., Hara-Nishimura, I., Takagi, S. and Matsunaga, S.* (2020) Subnuclear gene positioning through lamina association affects copper tolerance. Nature Commun., 11, 5914 (12 pages).

    https://www.nature.com/articles/s41467-020-19621-z

  4. Kato, K.#, Shinoda, T.#, Nagao, R.#, Akimoto, S., Suzuki, T., Dohmae, N., Chen, M., Allakhverdiev, S. I., Shen, J.-R.*, Akita, F.*, Miyazaki, N.* and Tomo, T.* (2020) Structural basis for the adaptation and function of chlorophyll f in photosystem I. Nature Commun., 11, 238 (10 pages). #These authors equally contributed to this work.

    https://www.nature.com/articles/s41467-019-13898-5

  5. Shinozaki, Y., Beauvoit, B. P., Takahara, M., Hao, S., Ezura, K., Andrieu, M. H., Nishida, K., Mori, K., Suzuki, Y., Kuhara, S., Enomoto, H., Kusano, M., Fukushima, A., Mori, T., Kojima, M., Kobayashi, M., Sakakibara, H., Saito, K., Ohtani, Y., Bénard, C., Prodhomme, D., Gibon, Y., Ezura, H. and Ariizumi, T.* (2020) Fruit setting rewires central metabolism via gibberellin cascades. Proc. Natl. Acad. Sci. U.S.A., 117, 23970-23981.

    https://www.pnas.org/content/117/38/23970

  6. Ochiai, K.*, Yamaoka, M., Swaminathan, A., Shima, H., Hiura, H., Matsumoto, M., Kurotaki, D., Nakabayashi, J., Funeyama, R., Nakayama, K., Arima, T., Ikawa, T., Tamura, T., Sciammas, R., Bouvet, P., Kundu, T. K.* and Igarashi, K.* (2020) Chromatin protein PC4 orchestrates B cell differentiation by collaborating with IKAROS and IRF4. Cell Rep., 33, 108517-108538.

    https://www.sciencedirect.com/science/article/pii/S2211124720315060

  7. Adamusová, K., Khosravi, S., Fujimoto, S., Houben, A., Matsunaga, S., Fajkus, J. and Fojtová, M.* (2020) Two combinatorial patterns of telomere histone marks in plants with canonical and non-canonical telomere repeats. Plant J., 102, 678-687.

    https://doi.org/10.1111/tpj.14653

  8. Luo, L., Ando, S., Sakamoto, Y., Suzuki, T., Takahashi, H., Ishibashi, N., Kojima, S., Kurihara, D., Higashiyama, T., Yamamoto, K. T., Matsunaga, S.*, Machida, C.*, Sasabe, M.* and Machida, Y.* (2020) The formation of perinucleolar bodies is important for normal leaf development and requires the zinc-finger DNA-binding motif in Arabidopsis ASYMMETRIC LEAVES2. Plant J., 101, 1118-1134.

    https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.14579

  9. Nagano, M.*#, Hoshino, D.#, Toshima, J., Seiki, M. and Koshikawa, N.* (2020) NH2-terminal fragment of ZF21 protein suppresses tumor invasion via inhibiting the interaction of ZF21 with FAK. Cancer Sci., 111, 4393-4404. #These authors equally contributed to this work.

    https://doi.org/10.1111/cas.14665

  10. Kossalbayeva, B. D., Tomo, T.*, Zayadan, B. K.*, Sadvakasova, A. K., Bolatkhan, K., Alwasel, S. and Allakhverdiev, S. I.* (2020) Determination of the potential of cyanobacterial strains for hydrogen production. Int. J. Hydrogen Energ., 45, 2627–2639.

    https://doi.org/10.1016/j.ijhydene.2019.11.164

  11. Hamoya, T., Fujii, G., Iizumi, Y ., Narita, T ., Komiya, M., Matsuzawa, Y., Miki, K., Kondo, T., Kishimoto, S., Watanabe, K., Wakabayashi, K., Sakai, T., Toshima, J. and Mutoh, M.* (2020) Artesunate inhibits intestinal tumorigenesis through inhibiting wnt signaling. Carcinogenesis, 42, 148-158.

    https://doi.org/10.1093/carcin/bgaa084

  12. Kanda, Y., Nishizawa, Y., Kamakura, T. and Mori, M.* (2020) Overexpressed BSR1-mediated enhancement of disease resistance depends on the MAMP-recognition system. Int. J. Mol. Sci., 21, 5397 (8 pages).

    https://www.mdpi.com/1422-0067/21/15/5397/htm

  13. Sakoda, K.*, Yamori, W., Shimada, T., Sugano, S. S., Hara-Nishimura, I. and Tanaka, Y. (2020) Higher stomatal density improves photosynthetic induction and biomass production in Arabidopsis under fluctuating light. Front Plant Sci., 11, 589603 (11 pages).

    https://doi.org/10.3389/fpls.2020.589603

  14. Komatsu, A.*, Ohtake, M., Shimatani, Z. and Nishida, K. (2020) Production of herbicide-sensitive strain to prevent volunteer rice infestation using a CRISPR-Cas9 cytidine deaminase fusion. Front. Plant Sci. , 11, 925 (11 pages).

    https://doi.org/10.3389/fpls.2020.00925

  15. Ishikawa, H.#, Yasuzawa, M.#, Koike, N.#, Sanjaya, A., Moriyama, S., Nishizawa, A., Matsuoka, K., Sasaki, S., Kazama, Y., Hayashi, Y., Abe, T., Fujiwara, M. T. and Itoh, R. D.* (2020) Arabidopsis PARC6 is critical for plastid morphogenesis in pavement, trichome, and guard cells in leaf epidermis. Front. Plant Sci., 10, 1665 (19 pages). #These authors equally contributed to this work.

    https://doi.org/10.3389/fpls.2019.01665

  16. Nakayama, S., Sugano, S. S., Hirokawa, H., Mori, I. C., Daimon, H., Kimura, S. and Fukao, Y.* (2020) Manganese treatment alleviates zinc deficiency symptoms in Arabidopsis seedlings. Plant Cell Physiol., 61, 1711-1723.

    https://doi.org/10.1093/pcp/pcaa094

  17. Nurani, A. M.*, Ozawa, Y., Furuya, T., Sakamoto, Y., Ebine, K., Matsunaga, S., Ueda, T., Fukuda, H. and Kondo, Y.* (2020) Deep imaging analysis in VISUAL reveals the role of YABBY genes in vascular stem cell fate determination. Plant Cell Physiol., 61, 255-264.

    https://doi.org/10.1093/pcp/pcaa002

  18. Hunziker, J., Nishida, K., Kondo, A., Kishimoto, S., Ariizumi, T. and Ezura, H.* (2020) Multiple gene substitution by Target-AID base-editing technology in tomato. Sci. Rep., 10, 20471 (12 pages).

    https://www.nature.com/articles/s41598-020-77379-2

  19. Sato, Y.*, Endo, H., Oikawa, H., Kanematsu, K., Naka, H., Mogamiya, M., Kawano, S. and Kazama, Y.* (2020) Sexual difference in the optimum environmental conditions for growth and maturation of the brown alga Undaria pinnatifida in the gametophyte stage. Genes, 11, 944 (18 pages).

    https://www.mdpi.com/2073-4425/11/8/944/htm

  20. Zhu, W., Salles, R., Miyachi, M.*, Yamanoi, Y.*, Tomo, T., Takahashi, H. and Nishihara, H.* (2020) Photoelectric conversion system composed of gene-recombined photosystem I and platinum nanoparticle nanosheet. Langmuir, 36, 6429–6435.

    https://pubs.acs.org/doi/10.1021/acs.langmuir.0c00647

  21. Uchiyama, J.*, Ito, Y., Matsuhashi, A., Ichikawa, Y., Sambe, M., Kitayama, S., Yoshino, Y., Moriyama, A., Kohga, H., Ogawa, S. and Ohta, H. (2020) Characterization of Sll1558 in environmental stress tolerance of Synechocystis sp. PCC 6803. Photosynth. Res., 146, 165-174.

    https://link.springer.com/article/10.1007%2Fs11120-020-00759-2

  22. Hirai, R., Higaki, T., Takenaka, Y., Sakamoto, Y., Hasegawa, J., Matsunaga, S., Demura, T.* and Ohtani, M.* (2020) The progression of xylem vessel cell differentiation is dependent on the activity level of VND7 in Arabidopsis thaliana. Plants, 9, 39 (12 pages).

    https://www.mdpi.com/2223-7747/9/1/39/htm

  23. Okamoto, S., Negishi, K., Toyama, Y., Ushijima, T. and Morohashi, K.* (2020) Leaf trichome distribution pattern in Arabidopsis reveals gene expression variation associated with environmental adaptation. Plants, 9, 909 (16 pages).

    https://www.mdpi.com/2223-7747/9/7/909/htm

  24. Arazoe, T., Kuroki, M. and Kamakura, T.* (2020) Cell wall-derived acetic acid may serve as an important messenger for metabolic switching-mediated infection-specific cell differentiation in the rice blast fungus. Fungal Genom. Biol., 10, 1000163 (3 pages).

    https://www.longdom.org/open-access/cell-wallderived-acetic-acid-may-serve-as-an-important-messenger-for-metabolic-switchingmediated-infectionspecific-cell-differenti-53887.html

  25. Kaya, K.*, Kazama, Y., Abe, T. and Shiraishi, F. (2020) Influence of medium components and pH on the production of odd-carbon fatty acids by Aurantiochytrium sp. SA-96. J. Appl. Phycol., 32, 1597-1606.

    https://link.springer.com/article/10.1007/s10811-020-02111-6

  26. Ohgo, S.*, Sakamoto, T., Nakajima, W., Matsunaga, S.* and Wada, N. (2020) Visualization of extracellular vesicles in the regenerating caudal fin blastema of zebrafish using in vivo electroporation. Biochem. Biophys. Res. Commun., 533, 1371-1377.

    https://doi.org/10.1016/j.bbrc.2020.10.024

  27. Yokoi, K., Balachandran, C., Umezawa, M., Tsuchiya, K., Mitrić, A. and Aoki, S.* (2020) Amphiphilic cationic triscyclometalated iridium (III) complex-peptide hybrids induce paraptosis-like cell death of cancer cells via an intracellular Ca2+-dependent pathway. ACS Omega, 5, 6983-7001.

    https://pubs.acs.org/doi/10.1021/acsomega.0c00337

  28. Kato, S., Motoyama, T.*, Uramoto, M., Nogawa, T., Kamakura, T. and Osada, H.* (2020) Induction of secondary metabolite production by hygromycin B and identification of the 1233A biosynthetic gene cluster with a self-resistance gene. J. Antibiot., 73, 475-479.

    https://www.nature.com/articles/s41429-020-0295-4

  29. Saito, T., Aono, R., Furuya, T. and Kino, K.* (2020) Efficient and long-term vanillin production from 4-vinylguaiacol using immobilized whole cells expressing Cso2 protein. J. Biosci. Bioeng., 130, 260-264.

    https://doi.org/10.1016/j.jbiosc.2020.04.012

  30. Kurumisawa, K., Ishizuna, F., Matsuoka, J.-I., Ogawa, T., Morohashi, K. and Aono, T.* (2020) Intercellular and intracellular colonization of Azorhizobium caulinodans in Arabidopsis thaliana under nitrogen deficient conditions. Soil Sci. Plant Nutr., 67, 71-79.

    https://doi.org/10.1080/00380768.2020.1842139

  31. Arazoe, T.* (2020) Development of genome-editing technologies for plant pathogenic fungi. J. Gen. Plant Pathol., 86, 523-525.

    https://link.springer.com/article/10.1007/s10327-020-00956-w

  32. Kawahara, K., Inoue-Kashino, N., Namie, K., Kato, Y., Tomo, T., Shibata, Y., Kashino, Y. and Noguchi, T.* (2020) A gold nanoparticle conjugate with photosystem I and photosystem II for development of a biohybrid water-splitting photocatalyst. Biomed. Spectrosc. Imaging, 9, 73–81.

    https://content.iospress.com/articles/biomedical-spectroscopy-and-imaging/bsi200200

  33. Umeyama, M., Hirose, J. and Morohashi, K.* (2020) UMEPPI: an ultrasensitive detection method for protein-protein interaction. MicroPubl. Biol., 10.17912/micropub.biology.000309 (4 pages).

    https://www.micropublication.org/journals/biology/micropub-biology-000309/

  34. Umeyama, M. and Morohashi, K.* (2020) Quantitative insight into the combinatorial interactions within MYB-BHLH-WD complex in Arabidopsis thaliana. MicroPubl. Biol., 10.17912/micropub.biology.000293 (4 pages).

    https://www.micropublication.org/journals/biology/micropub-biology-000293/

 

総説論文

  1. Sadvakasova, A. K., Kossalbayev, B. D., Zayadan, B. K., Bolatkhan, K., Alwasel, S., Najafpour, M. M., Tomo, T.* and Allakhverdiev, S. I.* (2020) Bioprocesses of hydrogen production by cyanobacteria cells and possible ways to increase their productivity. Renew. Sust. Energ. Rev., 133, 110054.

    https://doi.org/10.1016/j.rser.2020.110054

  2. Nishida, K. and Kondo, A.* (2020) CRISPR-derived genome editing technologies for metabolic engineering. Metab. Eng., 63, 141-147.

    https://www.sciencedirect.com/science/article/pii/S1096717620301865

  3. Oko, Y.#, Ito, N.# and Sakamoto, T.* (2020) The mechanisms and significance of the positional control of centromeres and telomeres in plants. J. Plant Res., 133, 471-478. #These authors equally contributed to this work.

    https://link.springer.com/article/10.1007/s10265-020-01202-2

  4. Nishioka, S., Sakamoto, T. and Matsunaga, S.* (2020) Roles of BRAHMA and its interacting partners in plant chromatin remodeling. Cytologia, 85, 263-267.

    https://www.jstage.jst.go.jp/article/cytologia/85/4/85_850403/_html/

  5. Kuroiwa, T.*, Yagisawa, F., Fujiwara, T., Inui, Y., Matsunaga, T. M., Kato, S., Matsunaga, S., Nagata, N., Imoto, Y. and Kuroiwa, H. (2020) Mitotic karyotype of the primitive red alga Cyanidioschyzon merolae 10D. Cytologia, 85, 107-113.

    https://www.jstage.jst.go.jp/article/cytologia/85/2/85_D-20-00024/_html/

  6. Fischer, U.*, Yang, J. J., Ikawa, T., Hein, D., Vicente-Dueñas, C., Borkhardt, A. and Sánchez-García, I.* (2020) Cell fate decisions: the role of transcription factors in early B-cell development and leukemia. Blood Cancer Discov., 1, 224-233.

    https://bloodcancerdiscov.aacrjournals.org/content/1/3/224

 

2019年

原著論文

  1. Kato, S., Okamura, E., Matsunaga, T. M., Nakayama, M., Kawanishi, Y., Ichinose, T., Iwane, A. H., Sakamoto, T., Imoto, Y., Ohnuma, M., Nomura, Y., Nakagami, H., Kuroiwa, H., Kuroiwa, T. and Matsunaga, S.* (2019) Cyanidioschyzon merolae aurora kinase phosphorylates evolutionarily conserved sites on its target to regulate mitochondrial division. Commun. Biol., 2, 477 (9 pages).

    https://doi.org/10.1038/s42003-019-0714-x

    プレスリリース
    真核生物の起源につながる、細胞内小器官の分裂を制御するメカニズムを発見 ～「自分の中のよそもの」との同時増殖を可能にした制御機構とは? ～（2019年12月20日）

    https://www.tus.ac.jp/mediarelations/archive/20191220001.html

    新聞ネット記事・テレビ報道
    EurekAlert (2019年12月20日）A step closer to understanding evolution -- mitochondrial division conserved across species

    https://eurekalert.org/pub_releases/2019-12/tuos-asc121919.php

  2. Ishihara, H.#, Sugimoto, K.*#, Tarr, P. T., Temman, H., Kadokura, S., Inui, Y., Sakamoto, T., Sasaki, T., Aida, M., Suzuki, T., Inagaki, S., Morohashi, K., Seki, M., Kakutani, T., Meyerowitz, E. M. and Matsunaga, S.* (2019) Primed histone demethylation regulates shoot regenerative competency. Nature Commun., 10, 1786 (15 pages). #These authors equally contributed to this work.

    https://www.nature.com/articles/s41467-019-09386-5

    プレスリリース
    植物の驚異的な再生能力の秘密を解明 －「備えあれば憂いなし」、傷を受ける前に再生準備を整える植物再生の新しいメカニズムを発見 －（2019年4月16日）

    https://www.tus.ac.jp/today/2019041701.pdf

    新聞ネット記事・テレビ報道
    日本経済新聞 (2019年5月12日）朝刊 30面　草木再生　カギ握る酵素　東京理科大など発見　栽培に応用も

    https://www.nikkei.com/article/DGKKZO44622050Q9A510C1MY1000/

    東京新聞 (2019年4月29日）朝刊 4面　びっくり！新技術　植物の再生能力　酵素の働きに秘密あり
    日経バイオテクONLINE (2019年4月26日）東京理科大、植物の再生能力を支えるエピジェネ酵素を同定　再生の新機構解明をNature姉妹誌にて発表

    https://bio.nikkeibp.co.jp/atcl/news/p1/19/04/24/05544/

    Crop Biotech Update (2019年4月24日）SCIENTISTS DISCOVER WAYS TO REGENERATE PLANT TISSUES

    http://www.isaaa.org/kc/cropbiotechupdate/article/default.asp?ID=17407

    Editage Insights (2019年4月22日）植物の強力な再生能力の秘密を解明 －「備えあれば憂いなし」、受傷の前に再生準備を整える新しいメカニズムを発見－

    https://www.editage.jp/insights/scientists-crack-the-code-to-regenerate-plant-tissues

    Innovation Tronto (2019年4月21日）Cracking the code to regenerate plant tissues

    https://www.innovationtoronto.com/2019/04/cracking-the-code-to-regenerate-plant-tissues/

    EurekAlert (2019年4月16日）Scientists crack the code to regenerate plant tissues

    https://www.eurekalert.org/pub_releases/2019-04/tuos-sct041619.php

    ScienceDaily (2019年4月16日）Scientists crack the code to regenerate plant tissues

    https://www.sciencedaily.com/releases/2019/04/190416132112.htm

    SCIENMAG (2019年4月16日）Scientists Crack The Code To Regenerate Plant Tissues

    https://scienmag.com/scientists-crack-the-code-to-regenerate-plant-tissues/

  3. Akagi, T.*, Pilkington, S. M., Varkonyi-Gasic, E., Henry, I. M., Sugano, S. S., Sonoda, M., Firl, A., McNeilage, M. A., Douglas, M. J., Wang, T., Rebstock, R., Voogd, C., Datson, P., Allan, A. C., Beppu, K., Kataoka, I. and Tao, R. (2019) Two Y-chromosome-encoded genes determine sex in kiwifruit. Nature Plants, 5, 801–809.

    https://www.nature.com/articles/s41477-019-0489-6

  4. Nagano, M., Toshima, J. Y.*, Siekhaus, D. E. and Toshima, J.* (2019) Rab5-mediated endosome formation is regulated at the trans-Golgi network. Commun. Biol., 2, 419 (12 pages).

    https://www.nature.com/articles/s42003-019-0670-5

  5. Krasovec, M., Kazama, Y., Ishii, K., Abe, T. and Filatov, D. A.* (2019) Immediate dosage compensation is triggered by the deletion of Y-linked genes in Silene latifolia. Curr. Biol., 29, 2214-2221.

    https://www.sciencedirect.com/science/article/pii/S0960982219306748

  6. Díaz, M., Pečinková, P., Nowicka, A., Baroux, C., Sakamoto, T., Gandha, P. Y., Jeřábková, H., Matsunaga, S.Grossniklaus, U. and Pecinka, A.* (2019) The SMC5/6 complex subunit NSE4A is involved in DNA damage repair and seed development. Plant Cell, 31, 1579–1597.

    http://www.plantcell.org/content/31/7/1579

  7. Nishiori, D., Zhu, W., Salles, R., Miyachi, M.*, Yamanoi, Y.*, Ikuta, T., Maehashi, K., Tomo, T. and Nishihara, H.* (2019) Photosensing system using photosystem I and gold nanoparticle on graphene field-effect transistor. ACS Appl. Mater. Interfaces, 11, 42773-42779.

    https://pubs.acs.org/doi/full/10.1021/acsami.9b14771

  8. Hirakawa, T., Kuwata, K., Gallego, M. E., White, C. I., Nomoto, M., Tada, Y. and Matsunaga, S.* (2019) LSD1-LIKE1-mediated H3K4me2 demethylation is required for homologous recombination repair. Plant Physiol., 181, 499-509.

    https://doi.org/10.1104/pp.19.00530

    プレスリリース
    植物がDNA損傷から身を守る、新規のエピジェネティクス制御メカニズムを解明 ～植物に多様なストレス耐性を付加でき、食糧生産にも貢献できる～（2019年8月5日）

    https://www.tus.ac.jp/mediarelations/archive/20190805001.html

    新聞ネット記事・テレビ報道
    Technology Networks (2019年8月5日）Novel Epigenetic Regulation Mechanism Underlies Improved Stress Response in Plants

    https://www.technologynetworks.com/applied-sciences/news/novel-epigenetic-regulation-mechanism-underlies-improved-stress-response-in-plants-322492

    SeedQuest (2019年8月1日）Scientists crack the code to improve stress tolerance in plants - Novel epigenetic regulation mechanism underlies improved stress response in plants, which can be exploited for global food security

    https://www.seedquest.com/news.php?type=news&id_article=109085

    Phys.org (2019年8月1日）Scientists crack the code to improve stress tolerance in plants

    https://phys.org/news/2019-08-scientists-code-stress-tolerance.html

    Science Daily (2019年8月1日）Scientists crack the code to improve stress tolerance in plants

    https://www.sciencedaily.com/releases/2019/08/190801104034.htm

  9. Akbarian, S., Kompany-Zareh, M.*, Najafpourm M. M., Tomo, T. and Allakhverdiev, S. I. (2019) Unsupervised classification of PSII with and without water-oxidizing complex samples by PARAFAC resolution of excitation-emission fluorescence images. J. Photochem. Photobiol. B., 195, 58-66.

    https://doi.org/10.1016/j.jphotobiol.2019.03.008

  10. Utsumi, Y., Utsumi, C., Tanaka, M., Ha, C. V., Takahashi, S., Matsui, A., Matsunaga, T. M., Matsunaga, S., Kanno, Y., Seo, M., Okamoto, Y., Moriya, E. and Seki, M.* (2019) Acetic acid treatment enhances drought avoidance in cassava (Manihot esculenta Crantz). Front. Plant Sci., 10, 521 (12 pages).

    https://www.frontiersin.org/articles/10.3389/fpls.2019.00521/full

  11. Hirakawa, T. and Matsunaga, S.* (2019) Characterization of DNA repair foci in root cells of Arabidopsis in response to DNA damage. Front. Plant Sci., 10, 990 (９pages).

    https://www.frontiersin.org/articles/10.3389/fpls.2019.00990/full

  12. Sakamoto, T., Sotta, N., Suzuki, T., Fujiwara, T. and Matsunaga, S.* (2019) The 26S proteasome is required for the maintenance of root apical meristem by modulating auxin and cytokinin responses under high-boron stress. Front. Plant Sci., 10, 590 (13 pages).

    https://www.frontiersin.org/articles/10.3389/fpls.2019.00590/full

  13. Sotta, N.#, Sakamoto, T.#, Matsunaga, S. and Fujiwara, T.* (2019) Abnormal leaf development of rpt5a mutant under zinc deficiency reveals important role of DNA damage alleviation for normal leaf development. Sci. Rep., 9, 9369 (10 pages). #These authors equally contributed to this work.

    https://www.nature.com/articles/s41598-019-44789-w

  14. Nozaka, A., Nishiwaki, A., Nagashima, Y., Endo, S., Kuroki, M., Nakajima, M., Narukawa, M., Kamisuki, S., Arazoe, T., Taguchi, H., Sugawara, F. and Kamakura, T.* (2019) Chloramphenicol inhibits eukaryotic Ser/Thr phosphatase and infection-specific cell differentiation in the rice blast fungus. Sci. Rep., 9, 9283 (10 pages).

    https://www.nature.com/articles/s41598-019-41039-x

  15. Yamato, T., Handa, A., Arazoe, T.*, Kuroki, M., Nozaka. A., Kamakura, T., Ohsato, S., Arie, T. and Kuwata, S.* (2019) Single crossover-mediated targeted nucleotide substitution and knock-in strategies with CRISPR/Cas9 system in the rice blast fungus. Sci. Rep., 9, 7427 (8 pages).

    https://www.nature.com/articles/s41598-019-43913-0

  16. Tanaka, N., Nakajima, M.*, Narukawa-Nara, M., Matsunaga, H., Kamisuki, S., Aramasa, H., Takahashi, Y., Sugimoto, N., Abe, K., Terada, T., Miyanaga, A., Yamashita, T., Sugawara, F., Kamakura, T., Komba, S., Nakai, H. and Taguchi, H. (2019) Identification, characterization and structural analyses of a fungal endo-β-1,2-glucanase reveal a new glycoside hydrolase family. J. Biol. Chem., 294, 7942-7965.

    http://www.jbc.org/content/294/19/7942

  17. Abe, M., Saito, M., Tsukahara, A., Shiokawa, S., Ueno, K., Shimamura, H., Nagano, M., Toshima, J. Y.* and Toshima, J.* (2019) Functional complementation reveals that 9 of the 13 human V-ATPase subunits can functionally substitute for their yeast orthologs. J. Biol. Chem., 294, 8273-8285.

    http://www.jbc.org/content/294/20/8273

  18. Allakhverdiev, S. I.*, Subramanyam, R. and Tomo, T. (2019) International Conference on “Photosynthesis and Hydrogen Energy Research for Sustainability-2017”. Photosynth. Res., 139, 1-8.

    https://link.springer.com/article/10.1007/s11120-018-0596-7

  19. Hashimoto, T., Nozawa, D., Mukai, K., Matsuyama, A., Kuramochi, K. and Furuya, T.* (2019) Monooxygenase-catalyzed regioselective hydroxylation for the synthesis of hydroxyequols. RSC Adv., 9, 21826-21830.

    https://pubs.rsc.org/en/content/articlelanding/2019/ra/c9ra03913a

  20. Bolatkhan, K., Kossalbayev, B. D., Zayadan, B. K.*, Tomo, T., Veziroglu, T. N. and Allakhverdiev, S. I.* (2019) Hydrogen production from phototrophicmicroorganisms: Reality and perspectives. Int. J. Hydrogen Energy, 44, 5799-5811.

    https://doi.org/10.1016/j.ijhydene.2019.01.092

  21. Borisova-Mubarakshina, M. M.*, Tsygankov, A. A.*, Tomo, T., Allakhverdiev, S. I., Eaton-Rye, J. J. and Govindjee, G. (2019) The 10th international conference on “Photosynthesis and Hydrogen Energy Research for sustainability”: A pictorial report in honor of Tingyun Kuang, Anthony Larkum, Cesare Marchetti and Kimiyuki Satoh. Int. J. Hydrogen Energy, 44, 30927-30934.

    https://doi.org/10.1016/j.ijhydene.2019.09.224

  22. Nguyen, P. T.*, Pham, N. D. H., Suzuki, A., Shimizu, K. and Fukiharu, T. (2019) Coprinopsis neocinerea sp. nov., an ammonia fungus from Southern Vietnam. Mycoscience, 60, 307-312.

    https://doi.org/10.1016/j.myc.2019.04.001

  23. Furuya, T.*, Imaki, N., Shigei, K., Sai, M. and Kino, K.* (2019) Isolation and characterization of Gram-negative and Gram-positive bacteria capable of producing piceatannol from resveratrol. Appl. Microbiol. Biotechnol., 103, 5811–5820.

    https://link.springer.com/article/10.1007%2Fs00253-019-09875-z

  24. Uchiyama, J.*, Itagaki, A., Ishikawa, H., Tanaka, Y., Kohga, H., Nakahara, A., Imaida, A., Tahara, H. and Ohta, H. (2019) Characterization of ABC transporter genes, sll1180, sll1181, and slr1270, involved in acid stress tolerance of Synechocystis sp. PCC 6803. Photosynth. Res., 139, 325-335.

    https://link.springer.com/article/10.1007%2Fs11120-018-0548-2

  25. Myobatake, Y., Kamisuki, S.*, Tsukuda, S., Higashi, T., Chinen, T., Takemoto, K., Hachisuka, M., Suzuki, Y., Takei, M., Tsurukawa, Y., Maekawa, H., Takeuchi, T., Matsunaga, T. M., Sahara, H., Usui, T., Matsunaga, S. and Sugawara, F. (2019) Pyrenocine A induces monopolar spindle formation and suppresses proliferation of cancer cells. Bioorg. Med. Chem., 27, 115149 (5 pages).

    https://www.sciencedirect.com/science/article/pii/S0968089619313136

  26. Kawamoto, H., Yamanaka, K., Koizumi, A., Ishii, K., Kazama, Y., Abe, T. and Kawano, S.* (2019) An asexual flower of Silene latifolia and Microbotryum lychnidis-dioicae promotes sex-organ development. PLoS One, 14, e0217329 (15 pages).

    https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0217329

  27. Ueno, K.*#, Otani, Y.#, Yanagihara, N., Nakamura, T., Shimizu, K.*, Yamagoe, S. and Miyazaki, Y. (2019) Cryptococcus gattii alters immunostimulatory potential in response to the environment. PLoS One, 14, e0220989 (18 pages) #These authors equally contributed to this work.

    https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0220989

  28. Sakamoto, T., Sugiyama, T., Yamashita, T. and Matsunaga, S.* (2019) Plant condensin II is required for the correct spatial relationship between centromeres and rDNA arrays. Nucleus, 10, 116-125.

    https://doi.org/10.1080/19491034.2019.1616507

  29. Hayashi, K. and Matsunaga, S.* (2019) Heat and chilling stress induce nucleolus morphological changes. J. Plant Res., 132, 395–403.

    https://link.springer.com/article/10.1007/s10265-019-01096-9

  30. Kurita, K.#, Sakamoto, Y.#, Naruse, S., Matsunaga, T. M., Arata, H., Higashiyama, T., Habu, Y., Utsumi, Y., Utsumi, C., Tanaka, M., Takahashi, S., Kim, J. M., Seki, M., Sakamoto, T. and Matsunaga, S.* (2019) Intracellular localization of histone deacetylase HDA6 in plants. J. Plant Res., 132, 629–640. #These authors equally contributed to this work.

    https://link.springer.com/article/10.1007%2Fs10265-019-01124-8

  31. Morisaku, T.*, Onuki, H., Hashimoto, K., Kuchitsu, K. and Yui, H.* (2019) Development of a near-infrared laser-induced surface deformation microscope and its application to the dynamic viscoelastic measurements of single living plant cell surfaces. Anal. Sci., 35, 1203-1207.

    https://doi.org/10.2116/analsci.19P227

    32.  

総説論文

  1. Toyoda, Y. and Matsunaga, S.* (2019) Lysine-specific demethylase epigenetically regulates human and plant phenomena. Cytologia, 84, 295-298.

    https://www.jstage.jst.go.jp/article/cytologia/84/4/84_840401/_article/

  2. Katayama, K., Mitsunobu, H. and Nishida, K.* (2019) Mammalian synthetic biology by CRISPRs engineering and applications. Curr. Opin. Plant Biol., 52, 79-84.

    https://www.sciencedirect.com/science/article/abs/pii/S1367593119300651