＜1-A-5 核酸の塩基配列の類似性検索＞
Wed May 20 17:19:14 JST 1998
BLASTN Search Result
Computed at GenomeNet on Wed May 20 17:19:21 JST 1998
Database Name GENBANK-NONST
>query
ccgcgccaga aagcagcgca ggtagctccg gcagagtatc gctgttttcc
agttgttcga gcataagaaa aaatcgcctg cttaattaac cagtgtggtg
tgcgatcgat acgtgtcgcg gcgaacttaa tacgctcacg cgtcgcgtcg
tccagcttaa cccccatggt ggtggttccc atgccattac tcctgttgtt
cagaaaggtg caacttaacg ttatcgtgaa atatccatga tgttgcaact
ttgtgcaacc atgttaaatg tgacatgcgt agcaagctta aaaatgaatg
aaatgttaat aaaagaaatc gatatgacag ggaaaaaaat aactcagact
ttttctctgc ggcagttaac atttttgaaa ggtgcaaccg caaaaaatgt
gagagagtgc aacctgatga aaaatagtgt cgctgagcac taaaatttaa
tgtaaatggt gtgttaaatc gattgtgaat aaccagcgct tccggcagga
tacggtcgcc ctggtaaaac ataaactctg ttaccccgtt ccggtggcag
atataacggc aagtttcgac attgccgata ataatttttt ggagacttta
gatggctatt agcacaccga tgttggtgac attttgtgtc tatatctttg
gcatgatatt gattgggttt atcgcctggc gatcaacgaa aaactttgac
gactatattc tgggcggtcg tagtcttggg ccattcgtga cggcattatc
ggcgggtgcg tcggatatga gcggctggct gttaatgggg ttgccgggcg
ctgtttttct ttccgggatt tccgaaagct ggatcgccat tggcctgaca
ttaggcgcgt ggattaactg gaagctggtg gccgggcggt tgcgtgtgca
taccgaatac aacaataacg ccttaacact gccggattat ttcaccgggc
gctttgaaga taaaagccgc attttgcgca ttatctctgc gctggttatt
ttgctgttct tcaccattta ttgcgcttcg ggcattgtgg caggcgcgcg
tctgtttgaa agtacctttg gcatgagcta cgaaacggct ctgtgggcgg
gcgctgcggc gacgatcctt tacaccttta ttggcggttt cctcgcggtg
agctggactg acactgtaca ggccagcctg atgatttttg ccctgatcct
gacgccggtt atcgtcatta tcagtgtcgg tggctttggt gactcgctgg
aagtgatcaa acaaaagagc atcgaaaacg ttgatatgct caaaggtctg
aactttgttg ccattatctc actgatgggt tgggggctgg gttacttcgg
gcagccgcac attctggcgc gttttatggc ggcggattct caccacagca
ttgtccatgc gcgtcgtatt agtatgacct ggatgatcct ctgcctggca
ggggcggtgg ctgtcggctt ctttgggatt gcttacttta acgatcatcc
ggcgttggct ggtgcggtaa atcagaacgc cgagcgtgtg tttatcgaac
tggcgcaaat tctgtttaac ccgtggattg ccgggattct gctgtcggca
attctggcgg cggtaatgtc aaccttaagt tgccagctgc tggtgtgctc
cagtgcgatt accgaagatt tgtacaaagc gtttctgcgt aaacatgcca
gccagaaaga gctggtgtgg gtagggcgtg tgatggtgct ggtggtggcg
ctggtggcga ttgcgctggc ggcaaacccg gaaaaccgcg tgctgggctt
agtgagctac gcgtgggcag gctttggcgc ggcgtttggt ccagtggtgc
tgttctcggt gatgtggtca cgcatgacgc gtaacggtgc gctggcgggg
atgatcatcg gtgcgctgac ggttatcgtc tggaaacagt tcggctggct
gggactgtac gaaattattc cgggctttat cttcggcagt attgggattg
tagtgtttag tttgctgggt aaagcgccgt cagcggcgat gcaaaaacgc
tttgccgagg ccgatgcgca ctatcattcg gctccgccgt cacggttgca
ggaaagctaa gggacttagc ctgcgcgttt tgtttggctt cagcagcggg
ttgcgcgtcc cttaatgtgc ctcgccatat aaattaatgt gcagggagcg
cgcagggggc gg
BLASTN 1.4.10MP [03-December-1996] [Build 17:51:05 Apr 21 1997]
Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers,
and David J. Lipman (1990). Basic local alignment search tool. J. Mol. Biol.
215:403-10.
Notice: this program and its default parameter settings are optimized to find
nearly identical sequences rapidly. To identify weak similarities encoded in
nucleic acid, use BLASTX, TBLASTN or TBLASTX.
Query= query
(2212 letters)
Database: GenBank: GenBank nucleic acid sequence database Release 105.0
596,610 sequences; 836,967,056 total letters.
Searching Value of numprocs 16
..................................................done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
gb:ECPUTP E.coli putP gene for proline carrier and re... 11060 0.0 1
gb:D90738 Escherichia coli genomic DNA. (22.9 - 23.3 ... 8965 0.0 5
gb:ECAE000203 Escherichia coli K-12 MG1655 section 93 of ... 8965 0.0 5
gb:ECOPUTPC Escherichia coli (EC10) proline permease (p... 8680 0.0 2
gb:ECOPUTPD Escherichia coli (EC14) proline permease (p... 8671 0.0 2
gb:ECOPUTPJ Escherichia coli (E8305) proline permease (... 8446 0.0 2
gb:ECOPUTPK Escherichia coli (EC70) proline permease (p... 8432 0.0 2
gb:ECOPUTPE Escherichia coli (EC32) proline permease (p... 8347 0.0 2
gb:ECOPUTPA Escherichia coli (E2666) proline permease (... 8338 0.0 2
gb:ECOPUTPH Escherichia coli (EC58) proline permease (p... 8329 0.0 2
gb:ECOPUTPB Escherichia coli (E3406) proline permease (... 8293 0.0 2
gb:ECOPUTPG Escherichia coli (EC52) proline permease (p... 8275 0.0 2
gb:ECOPUTPI Escherichia coli (EC64) proline permease (p... 8239 0.0 2
gb:ECOPUTPF Escherichia coli (EC40) proline permease (p... 8212 0.0 2
gb:ECOPUTPL Escherichia coli (E8518) proline permease (... 7173 0.0 3
gb:STPUTP Salmonella typhimurium putP gene for prolin... 5321 0.0 1
gb:STYPUTPI Salmonella (S3015) proline permease (putP) ... 5317 0.0 3
gb:STYPUTPJ Salmonella (S3027) proline permease (putP) ... 5308 0.0 3
gb:STYPUTPN Salmonella (S2979) proline permease (putP) ... 5290 0.0 3
gb:STYPUTPM Salmonella (S2978) proline permease (putP) ... 5272 0.0 3
gb:STYPUTPF Salmonella (S2983) proline permease (putP) ... 5262 0.0 3
gb:RIRPUTPA Rickettsia typhi (S3333) proline permease (... 5236 0.0 3
gb:STYPUTPK Salmonella (S3013) proline permease (putP) ... 5227 0.0 3
gb:STYPUTPL Salmonella (S3014) proline permease (putP) ... 5227 0.0 3
gb:STYPUTPB Salmonella typhimurium (S4194) proline perm... 5218 0.0 3
gb:STYPUTPO Salmonella (S3041) proline permease (putP) ... 5218 0.0 3
gb:STYPUTPP Salmonella (S3044) proline permease (putP) ... 5218 0.0 3
gb:STYPUTPE Salmonella (S2980) proline permease (putP) ... 5208 0.0 3
gb:STYPUTPH Salmonella (S3057) proline permease (putP) ... 5191 0.0 3
gb:STYPUTPG Salmonella (S2995) proline permease (putP) ... 5182 0.0 3
gb:STYPUTPD Salmonella (PUTTEMP) proline permease (putP... 5146 0.0 3
gb:STYPUTPC Salmonella sp. (S2985) proline permease (pu... 5128 0.0 3
gb:ECOPUTC E.coli putC region encoding proline uptake ... 3650 5.0e-296 1
gb:PSEPPB Pseudomonas fluorescens gene for proline pe... 3467 1.4e-278 1
gb:S76070 proline permease [Pseudomonas fluorescens, ... 3467 1.4e-278 1
gb:HIU32814 Haemophilus influenzae from bases 1423686 t... 1071 8.9e-149 2
gb:KPPUTP K.pneumoniae control region of putP. 1315 1.4e-132 3
gb:KPNPUTAP Klebsiella sp. putP gene, 5' end, and putA ... 664 3.3e-118 5
gb:HPAE000527 Helicobacter pylori section 5 of 134 of the... 893 4.1e-104 3
gb:D50453 Bacillus subtilis DNA for 25-36 degree regi... 893 3.9e-101 2
gb:BSUB0002 Bacillus subtilis complete genome (section ... 893 5.9e-101 2
gb:STPUTPA S. typhimurium put regulatory region (proli... 607 2.7e-99 5
gb:ECU05212 Escherichia coli K12 proline dehydrogenase ... 1027 2.2e-92 2
gb:D90739 Escherichia coli genomic DNA. (23.2 - 23.5 ... 1115 1.1e-89 3
gb:ERWATROA Erwinia carotovora atroseptica DNA sequence. 960 3.4e-71 1
gb:A41508 Sequence 1 from Patent WO9426929. 960 3.4e-71 1
gb:CGPUTP C.glutamicum putP gene. 712 1.6e-64 3
gb:BSU92466 Bacillus subtilis strain JH642 amidase-like... 838 1.7e-58 1
gb:AF011545 Bacillus subtilis SapB (sapB), OpuE (opuE),... 838 1.8e-58 1
gb:BSUB0004 Bacillus subtilis complete genome (section ... 838 2.0e-58 1
gb:STPUTA S.typhimurium putA gene for proline dehydro... 420 5.1e-33 2
gb:ECPUTA E.coli (K12-CSH4) PUTA gene. 348 4.4e-27 2
gb:AF038838 Klebsiella aerogenes proline dehydrogenase ... 421 1.0e-23 1
gb:HSY11950 H.sapiens PHKG2 gene, exon 1-6 and joined CDS. 167 0.015 1
gb:LMU70253 Leishmania major chrosmosome 1 cosmid L5701... 125 0.077 4
gb:AC000097 *** SEQUENCING IN PROGRESS *** Homo sapiens... 158 0.085 1
gb:RNU81010 Rattus norvegicus glutamate receptor kainat... 154 0.17 1
gb:LCSHEATH2 L.carinii shp2 gene for microfilarial sheat... 153 0.20 1
gb:LYMSERREC Lymnaea stagnalis serotonin receptor mRNA, ... 126 0.37 3
gb:OWEPH18 O.fusiformis CCPurine repeat sequence. 149 0.38 1
gb:ATMS2 A.thaliana minisatellite sequence 2, chromo... 143 0.60 1
gb:RNU22062 Rattus norvegicus neurogranin/RC3 protein (... 144 0.73 1
gb:MUSCOLXVII Mus musculus collagen type XVII mRNA, compl... 143 0.79 1
gb:CEF13A7 Caenorhabditis elegans cosmid F13A7, comple... 141 0.90 1
gb:PFAMSA2 P.falciparum 45 kD merozoite surface antige... 140 0.92 1
gb:A06129 Synthetic nucleotide sequence for MSA2 3D7 ... 140 0.92 1
gb:FR0020345 F.rubripes GSS sequence, clone 041B19aA11. 139 0.94 1
gb:MBU36763 Mycobacterium bovis fatty acid synthase gen... 140 0.94 1
gb:MTCY159 Mycobacterium tuberculosis cosmid Y159. 140 0.94 1
gb:DMC25D2 Drosophila melanogaster cosmid 25D2. 139 0.97 1
gb:DMC56F3 Drosophila melanogaster cosmid 56F3, comple... 139 0.97 1
gb:HSAC000119 Human BAC clone RG104I04 from 7q21-7q22, co... 150 0.97 2
gb:PFU72956 Plasmodium falciparum merozoite surface pro... 137 0.98 1
gb:PFU07008 Plasmodium falciparum WOS isolate 8 merozoi... 137 0.99 1
gb:HSB280XH5 H.sapiens (D20S878) DNA segment containing ... 136 0.992 1
gb:PFU72953 Plasmodium falciparum merozoite surface pro... 136 0.994 1
gb:PFAMSA2R Plasmodium falciparum (MSA-2) gene, partial... 136 0.995 1
gb:PFAMSA2T Plasmodium falciparum (MSA-2) gene, partial... 136 0.995 1
gb:PFAMSA2O Plasmodium falciparum (MSA-2) gene, partial... 136 0.995 1
gb:PFGMSSA P.falciparum glycosylated and myristilated ... 136 0.996 1
gb:PMRHOD5 Petromyzon marinus rhodopsin gene, exon 5 a... 136 0.996 1
gb:PFU07005 Plasmodium falciparum WOS isolate 5 merozoi... 135 0.998 1
gb:PFAMSA2B Plasmodium falciparum merozoite surface ant... 135 0.998 1
gb:PF1MSA2 P. falciparum MSA2 gene for merozoite surfa... 135 0.999 1
gb:PFAMSA22 P.falciparum merozoite surface antigen MSA2... 135 0.999 1
gb:PFAMSA2X P.falciparum 45,000 merozoite surface antig... 135 0.999 1
gb:A06131 Synthetic nucleotide sequence for MSA2 IC i... 135 0.999 1
gb:PFAMEM7AA P.falciparum membrane protein Pf7 gene, com... 135 0.999 1
gb:RNU29397 Rattus norvegicus plasma membrane Ca2+ ATPa... 135 0.9992 1
gb:RNU25281 Rattus norvegicus SH3 domain binding protei... 135 0.9993 1
gb:AC002525 Human PAC clone 257C22A from 13q12-q13, com... 135 0.9993 1
gb:DPU51080 Drosophila paulistorum A28 Belem period pro... 134 0.9998 1
gb:XL51R Xenopus laevis mRNA for 51 kD cytokeratin t... 134 0.9998 1
以下略