原著論文
Toh-e A, Ohkusu M, Li H-M, Shimizu K, Takahashi-Nakaguchi A, Gonoi T, Kawamoto S, Kanesaki Y, Yoshikawa H, Nishizawa M: Identification of genes involved in the phosphate metabolism in Cryptococcus neoformans. Fungal Genetics and Biology, vol. 80, pp.19-30 (2015).
Fukiharu T, Shimizu K, Nakajima A, Miyamoto T, Raut JK, Kinjo N: Coprinopsis igarashii sp. nov., a coprophilous agaric fungus from Hokkaido, northern Japan. Mycoscience, vol. 56, pp. 413-418 (2015).
Toh-e, A, Shimizu K, Ohkusu M, Kawamoto S: Positional cloning in Cryptococcus neoformans and its application for identification and cloning of the gene encoding methylenetetrahydrofolate reductase. Fungal Genetics and Biology, vol. 76, pp.70-77 (2015).
Shimizu K, Nakagawa H, Hashimoto R, Hagiwara D, Onji Y, Asano K, Kawamoto S, Takahashi H, Yokoyama K: The α-oxoamine synthase gene fum8 is involved in fumonisin B2 biosynthesis in Aspergillus niger. Mycoscience, vol. 56, pp.301-308 (2015).
Ueno K, Kinjo Y, Okubo Y, Aki K, Urai M, Kaneko Y, Shimizu K, Wang DN, Okawara A, Nara T, Ohkouchi K, Mizuguchi Y, Kawamoto S, Kamei K, Ohno H, Niki Y, Shibuya K, Miyazaki Y: Dendritic cell-based immunization ameliorates pulmonary infection with highly virulent Cryptococcus gattii. Infection and Immunity, vol. 83, pp.1577-1586 (2015).
Yamaguchi M, Shimizu K, Kawamoto S, Stepanova AA, Vasilyeva NV: Electron microscopy of autopsy material from the human brain Cryptococcosis and AIDS. Problems in Medical Mycology, vol. 17, pp. 35-40 (2015).
Shimizu K, Imanishi Y, Toh-e A, Uno J, Chibana H, Hull CM, Kawamoto S: Functional characterization of PMT2, encoding a protein-O-mannosyltransferase, in the human pathogen Cryptococcus neoformans. Fungal Genetics and Biology, vol. 69, pp.13-22 (2014).
Yamaguchi M, Shimizu K, Kawamoto S, Stepanova AA, Vasilyeva NV: Ultrastructural patterns of cellular components during budding in the yeast Malassezia pachydermatis. Problems in Medical Mycology, vol. 16, pp. 13-18 (2014).
Yamaguchi M, Shimizu K, Kawamoto S, Stepanova AA, Vasilyeva NV: Dynamics of cell components during budding of Cryptococcus albidus yeast cells. Problems in Medical Mycology，vol. 16, pp. 29-35 (2014).
Fukiharu T, Shimizu K, Utsunomiya H, Raut JK, Goto R, Okamoto T, Kato M, Horigome R, Furuki T, Kinjo N: Coprinopsis asiaticiphlyctidospora sp. nov., an agaric ammonia fungus from Amami and Okinawa, southern Japan. Mycoscience，vol. 55, pp. 355–360 (2014).
Yoshimi A, Sano M, Inaba A, Kokubun Y, Fujioka T, Mizutani O, Hagiwara D, Fujikawa T, Nishimura M, Yano S, Kasahara S, Shimizu K, Yamaguchi M, Kawakami K, Abe K: Functional analysis of the α-1,3-glucan synthase genes agsA and agsB in Aspergillus nidulans: agsB is the majorα-1,3-glucan synthase in this fungus. PLoS One, vol.8, e54893 (2013).
Kaitsu Y, Shimizu K, Tanaka E, Shimano S, Uchiyama S, Tanaka C, Kinjo N: Ophiocordyceps sessilis sp. nov., a new species of Ophiocordyceps emerged on Camponotus ants in Japan. Mycological Progress, vol.12, pp.755-761 (2013).
Fukiharu T, Shimizu K, Li RY, Raut JK, Yamakoshi S, Horie Y, Kinjo N: Coprinopsis novorugosobispora sp. nov., an agaric ammonia fungus from Beijing, China. Mycoscience, vol. 54, pp.226–230 (2013).
Hatoh K, Izumitsu K, Morita A, Shimizu K, Ohta A, Kawai M, Yamanaka T, Neda H, Ota Y, Tanaka C: Transformation of the mushroom species Hypsizigus marmoreus, Flammulina velutipes, and Grifola frondosa by an Agrobacterium- mediated method using a universal transformation plasmid. Mycoscience, vol.54, pp.8-12 (2013).
Pham NDH, Yamada A, Shimizu K, Noda K, Dang LAT, Suzuki A: A sheathing mycorrhiza between the tropical bolete Phlebopus spongiosus and Citrus maxima. Mycoscience, vol.53, pp.347-353 (2012).
Pham NDH, Takahashi H, Fukiharu T, Shimizu K, Le BD, Suzuki A: A new Phlebopus species (Boletales, Boletinellaceae) with a sponge-like hymenium. Mycotaxon, vol.119, pp.27–34 (2012).
Saitoh Y, Izumitsu K, Morita A, Shimizu K, Tanaka C: Cloning of Sal1, a scytalone dehydratase gene involved in melanin biosynthesis in Cochliobolus heterostrophus. Mycoscience, vol.53, pp.330–334 (2012).
Matsumoto Y, Miyazaki S, Fukunaga D-H, Shimizu K, Kawamoto S, Sekimizu K: Quantitative evaluation of cryptococcal pathogenesis and antifungal drugs using a silkworm infection model with Cryptococcus neoformans. Journal of Applied Microbiology, vol.112, pp.138-146 (2011).
Raut JK, Suzuki A, Fukiharu T, Shimizu K, Kawamoto S, Tanaka C: Coprinopsis neophylyctidospora sp. nov., a new ammonia fungus from boreal forest in Canada. Mycotaxon, vol. 115, pp.227-238 (2011).
Namiki K, Ueno K, Mitani H, Virtudazo E, Ohkusu M, Shimizu K, Kawamoto S, Chibana H, Yamaguchi M: Scanning and negative-staining electron microscopy of protoplast regeneration of a wild-type and two chitin synthase mutants in the pathogenic yeast Candida glabrata. J Electron Microsc vol.60, pp.157–165 (2011).
Staudt MW, Kruzel EK, Shimizu K, Hull CM: Characterizing the role of the microtubule binding protein Bim1 in Cryptococcus neoformans. Fungal Genet. Biol. vol.47, pp.310-317 (2010).
Saitoh Y, Izumitsu K, Morita A, Shimizu K, Tanaka C: ChMCO1 of Cochliobolus heterostrophus is a new class of metallo-oxidase, playing an important role in DHN-melanization. Mycoscience vol.51, pp.327-336 (2010).
Li H-M, Virtudazo EV, Toh-e A, Yamaguchi M, Kawamoto S, Shimizu K: Non-homologous end joining pathway of the human pathogen Cryptococcus neoformans influences homologous integration efficiency but not virulence. Mycoscience vol.51, pp.272-280 (2010).
Shimizu K, Li H-M, Virtudazo EV, Watanabe A, Kamei K, Yamaguchi M, Kawamoto S: Deletion of CnLIG4 DNA ligase gene in the fungal pathogen Cryptococcus neoformans elevates homologous recombination efficiency. Mycoscience vol.51, pp.28-33 (2010).
Tanaka E, Shimizu K, Imanishi Y, Yasuda F, Tanaka C: Isolation of basidiomycetous anamorphic yeast-like fungus Meira argovae found on Japanese bamboo. Mycoscience vol.49, pp.329-333 (2008).
Drivinya A, Szilagy S, Sipiczki M, Takeo K, Shimizu K: Structural and functional analysis of genes encoding fork head proteins in Cryptococcus neoformans. Biologia, Bratislava vol.59, pp.711-718 (2004).
Drivinya A, Shimizu K, Takeo K: Construction of a complete URA5 deletion strain of a human pathogenic yeast Cryptococcus neoformans. Jpn. J. Med. Mycol. vol.45, pp.1-6 (2004).
Shimizu K, Hicks JK, Huang T-P, Keller NP: Pka, Ras and RGS protein interactions regulate activity of AflR, a Zn(II)2Cys6 transcription factor in Aspergillus nidulans. Genetics, vol.165, pp.1095-1104 (2003).
Tanaka C, Shimizu K, Gafur A, Tsuda M: Polyoxin resistance of reddish brown laboratory mutants of Cochliobolus heterostrophus. J. Gen. Plant Pathol. vol.68, pp.141-146 (2002).
Sun G-G, Oide S, Tanaka E, Shimizu K, Tanaka C, Tsuda M: Species separation in Curvularia “geniculata” group inferred from Brn1 gene sequences. Mycoscience, vol.44, pp.239-244 (2002).
Fillinger S, Chaveroche M-K, Shimizu K, Keller N, d’Enfert C: cAMP and ras signaling independently control spore germination in the filamentous fungus Aspergillus nidulans. Mol. Microbiol. vol. 44, pp.1001-1016 (2002).
Shimizu K, Keller NP: Genetic involvement of a cAMP-dependent protein kinase in a G protein signaling pathway regulating morphological and chemical transitions in Aspergillus nidulans. Genetics, vol.157, pp.591-600 (2001).
Shimizu K, Tanaka C, Peng YL, Tsuda M: Phylogeny of Bipolaris inferred from the nucleotide sequences of Brn1, a reductase gene involved in melanin biosynthesis. J. Gen. Appl. Microbiol. vol.44 pp.251-258 (1998).
Gafur A, Tanaka C, Shimizu K, Ouchi S, Tsuda M: Molecular analysis and characterization of the Cochliobolus heterostrophus beta-tubulin gene and its possible role in conferring resistance to benomyl. J. Gen. Appl. Microbiol. vol.44, pp.217-223 (1998).
Gafur A, Tanaka C, Shimizu K, Ouchi S, Tsuda M: Genetic analysis of Cochliobolus heterostrophus polioxin resistant mutants. Mycoscience vol.39 pp.155-159 (1998).
Kuwahara Y, Mori N, Shimizu K, Tanaka C, Tsuda M: Pheromone studies on astigmatid mites: recent progress, a comparison of molecular phylogeny, distribution and function of female sex pheromone in Caloglyphus spp. (Acarina: Acaridae). J. Asian-Pacific Entomol. vol.1 pp.9-15 (1998).
Shimizu K, Tanaka C, Tsuda M: Cloning of Brn1, a reductase gene involved in melanin biosynthesis in Cochliobolus heterostrophus. J. Gen. Appl. Microbiol. vol.43 pp.145-150 (1997).
Tsuda M, Shimizu K, Matsumura K, Tanaka E, Tanaka C, Doi Y: Host range of Aciculosporium take, the causal agent of witches’ bloom of bamboo plants. Bul. Natl. Sci. Mus. vol.23, pp.25-34 (1997).
Shimizu K, Tanaka C, Tsuda M: Genetic analysis of Cochliobolus heterostrophus albino mutant with deficiencies at two loci. Mycoscience vol.37 pp.345-349 (1996).
Takano Y, Kubo Y, Shimizu K, Mise K, Okuno T, Furusawa I: Structural analysis of PKS1, a polyketide synthase gene involved in melanin biosynthesis in Colletotrichum lagenarium. Mol. Gen. Genet. vol.249, pp.162-167 (1995).
著書
吹春俊光，寶田浩太郎，清水公徳：糞に生える真菌類，柿嶌眞・徳増征二編，菌類の生物学－分類・系統・生体・環境・利用－，共立出版，pp.263-277（2014）．
清水公徳：異型担子菌の交配行動，日本菌学会編，菌類の事典・基礎編，朝倉書店，pp.217-219（2013）．
清水公徳：異型担子菌の交配型遺伝子，日本菌学会編，菌類の事典・基礎編，朝倉書店，pp.246-248（2013）．
清水公徳：クリプトコックス属の一種，日本菌学会編，菌類の事典・人間社会編，朝倉書店，pp.564-565（2013）．
Hicks JK, Shimizu K, Keller NP: Genetics and biosynthesis of aflatoxin and sterigmatocystin. The Mycota, Vol XI, Kempken and Bennett (eds.), Springer-Verlag, pp.55-69 (2002).
総説
清水公徳，渡辺哲，亀井克彦，川本進：ヒト病原菌クリプトコックスの感染メカニズムに関する一考察，植物感染生理談話会論文集 47巻pp.95-101（2012）．
東江昭夫，清水公徳，Li Hao-Man，西沢正文，川本進：クリプトコックスのリン酸代謝制御系，Medical Mycology Journal 52: 19-23 (2011).
清水公徳：病原真菌クリプトコックスの遺伝子ターゲッティング効率向上への取り組み，Mycotoxins 60巻 pp.37-42（2010）．
田中千尋，泉津弘佑，吉見啓，清水公徳，木村真，本山高幸：病原糸状菌の浸透圧応答シグナル伝達経路，化学と生物 47巻pp.644-650（2009）．
清水公徳：カビの二次代謝に関与する転写因子の活性制御，バイオサイエンスとインダストリー 63巻 pp.382-385（2005）．
McDonald T, Devi T, Shimizu K, Sim S-C, Keller NP：Signaling events connecting mycotoxin biosynthesis and sporulation in Aspergillus and Fusarium spp. New Horizon of Mycotoxicology for Assuring Food Safety Proceedings of the International Symposium of Mycotoxicology pp.139-147 (2004).
