研究成果 公募研究班・研究成果

「公募研究班・研究成果(2016~2017年度)」はこちら

*Corresponding author, #These authors contributed equally to this work.
実線下線は研究代表者、点線下線は研究分担者

 
有村班 打田班 遠藤班 川崎班
木羽班 木村班 西條班 清水班
寿崎班 関班 高野班 高橋班
竹澤班 玉田班 豊田班 千葉班
野田口班 藤井班 松下班 山口班

有村班

  • -2018年-
    原著論文
    Nakayasu, M., Shioya, N., Shikata, M., Thagun, C., Abdelkareem, A., Okabe, Y., Ariizumi, T., Arimura, G., Mizutani, M., Ezura, H., Hashimoto, T., and *Shoji, T. (2018) JRE4 is a master transcriptional regulator of defense-related steroidal glycoalkaloids in tomato. Plant J., 94, 975-990.
    https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.13911
    Uemura, T., Yashiro, T., Oda, R., Shioya, N., Nakajima, T., Hachisu, M., Kobayashi, S., Nishiyama, C., and *Arimura, G. (2018) Intestinal anti-inflammatory activity of perillaldehyde. J. Agri. Food Chem., 66, 3443-3448. [プレスリリース]
    https://pubs.acs.org/doi/10.1021/acs.jafc.8b00353
    日本語著書・解説
    有村源一郎、西原昌宏(2018)植物のたくらみ ― 香りと色の植物学、ペレ出版、印刷中
    プレスリリース
    シソの香りによる腸炎の緩和 ~シソを食することで腸内環境を改善~ (2018年3月26日)
    http://www.tus.ac.jp/today/20180326001.pdf
  • -2017年-
    原著論文
    Nemoto, K., Ramadan, A., Arimura, G., Imai, K., Tomii, K., Shinozaki, K., and *Sawasaki, T. (2017) Tyrosine phosphorylation of the GARU E3 ubiquitin ligase promotes gibberellin signalling by preventing GID1 degradation. Nature Commun., 8, 1004 (15 pages). [プレスリリース]
    [新聞ネット記事]
    https://www.nature.com/articles/s41467-017-01005-5
    Ozawa, R., Endo, H., Iijima, M., Sugimoto, K., Takabayashi, T., Gotoh, T. and *Arimura, G. (2017) Intraspecific variation among Tetranychid mites for ability to detoxify and to induce plant defenses. Sci. Rep., 7, 43200 (11 pages).
    https://www.nature.com/articles/srep43200
    総説論文
    *Yazaki, K., Arimura, G., and Ohnishi, T. (2017) 'Hidden' terpenoids in plants: their biosynthesis, localisation and ecological roles. Plant Cell Physiol., 58, 1615-1621.
    https://academic.oup.com/pcp/article/58/10/1615/4096626
    英語著書
    Arimura, G. and Pearse, I. (2017) From the lab bench to the forest: ecology and defence mechanisms of volatile-mediated "talking trees." In "Advances in Botanical Research vol. 82. Communication between Plants, and between Plants and Other Organisms" edited by Becard, G. Elsevier, 3-17.
    プレスリリース
    チロシンリン酸化によるジベレリン応答の新しい制御機構を発見 - 高塩濃度環境下で植物種子が発芽できない機構が明らかに - (2017年10月13日)
    https://www.ehime-u.ac.jp/wp-content/uploads/2017/10/45cda28f9ffe80203ff5ce56b2cb6528.pdf
    新聞ネット記事・テレビ報道
    愛媛新聞 (2017年10月20日) 植物の発芽抑制タンパク質発見
    フジサンケイビジネスアイ (2017年6月21日) 植物の香りを介した植物間コミュニケーション
    BSフジ「ガリレオX」(2017年6月11、18日) 植物が会話する!? 匂いで伝えるコミュニケーション
  • -2016年-
    日本語著書・解説
    *有村源一郎、林鎬俊、助川聖 (2016) 植物の香りと生態系ネットワーク、香料 272, 37-43.
    英語著書
    Arimura, G. and Maffei, M. E. (2016) Plant specialized metabolism: genomics, biochemistry, and biological functions. CRC Press, Boca Raton, FL, USA, 376.
    Arimura, G. and Maffei, M. E. (2016) Introduction to plant specialized metabolism. In "Plant Specialized Metabolism: Genomics, Biochemistry, and Biological Functions" edited by Arimrua, G. and Maffei, M.E. CRC Press, 1-7.
    Arimura, G., Matsui, K., Koeduka, T., Holopainen, J.K. (2016) Biosynthesis and regulation of plant volatiles, and their functional roles in ecosystem interactions and global environmental changes. In "Plant Specialized Metabolism: Genomics, Biochemistry, and Biological Functions" edited by Arimrua, G. and Maffei, M.E. CRC Press, 185-237.

打田班

川崎班

木羽班

  • -2018年-
    原著論文
    Xu, Y., Prunet, N., Gan, E.-S., Wang, Y., Stewart, D., Wellmer, F., Huang, J., Yamaguchi, N., Tatsumi, Y., Kojima, M., Kiba, T., Sakakibara, H., Jack, T. P., Meyerowitz, E. M., and *Ito, T. (2018) SUPERMAN regulates floral whorl boundaries through control of auxin biosynthesis. EMBO J., in press.
    http://emboj.embopress.org/content/early/2018/05/14/embj.201797499
    *Kiba, T., Inaba, J., Kudo, T., Ueda, N., Konishi, M., Mitsuda, N, Takiguchi, Y., Kondou, Y., Yoshizumi, T., Ohme-Takagi, M., Matsui, M., Yano, K., Yanagisawa, S., and Sakakibara, H. (2018) Repression of nitrogen-starvation responses by members of the Arabidopsis GARP-type transcription factor NIGT1/HRS1 subfamily. Plant Cell, 30, 925-945.
    http://www.plantcell.org/content/30/4/925
    #Maeda, Y., #Konishi, M., Kiba, T., Sakuraba, Y., Sawaki, N., Kurai, T., Ueda, Y., Sakakibara, H., and *Yanagisawa, S. (2018) A NIGT1-centred transcriptional cascade regulates nitrate signalling and incorporates phosphorus starvation signals in Arabidopsis. Nature Commun., 9, 1376 (14 pages).
    https://www.nature.com/articles/s41467-018-03832-6
  • -2017年-
    原著論文
    Pudasaini, A., Shim, J. S., Song, Y. H., Shi, H., Kiba, T., Somers, D. E., Imaizumi, T., and *Zoltowski, D. E. (2017) Kinetics of the LOV domain of ZEITLUPE determine its circadian function in Arabidopsis. eLIFE, 6, e21646 (27 pages).
    https://elifesciences.org/articles/21646#abstract
    Osugi, O., Kojima, M., Takebayashi, Y., Ueda, N., Kiba, T., and *Sakakibara, H. (2017) Systemic transport of trans-zeatin and its precursor have differing roles in Arabidopsis shoots. Nature Plants, 3 , 17112. [プレスリリース]
    https://www.nature.com/articles/nplants2017112
    #Spallek, T., #Melnyk, C., W., Wakatake, T., Zhang, J., Sakamoto, Y., Kiba, T., Yoshida, S., Matsunaga, S., Sakakibara, H. and *Shirasu, K. (2017) Interspecies hormonal control of host root morphology by parasitic plants. Proc. Natl. Acad. Sci. U.S.A., 114, 5283-5288.
    http://www.pnas.org/content/114/20/5283
    プレスリリース
    サイトカイニン輸送による植物成長促進制御の新たなしくみを発見 (2017年7月25日)
    http://www.nagoya-u.ac.jp/about-nu/public-relations/researchinfo/upload_images/20170725_agr_2.pdf
  • -2016年-
    原著論文
    *Kiba, T. and Henriques, R. (2016) Assessing protein stability under different light and circadian conditions. Methods Mol. Biol., 398, 141-152.
    https://link.springer.com/protocol/10.1007%2F978-1-4939-3356-3_13
    *Nakamichi, N., Takao, S., Kudo, T., Kiba, T., Wang, Y., Kinoshita, T., and Sakakibara, H. (2016) Improvement of Arabidopsis biomass and cold, drought, and salinity stress tolerance by modified circadian clock-associated PSEUDO-RESPONSE REGULATORs. Plant Cell Physiol., 57, 1085-1097.
    http://pcp.oxfordjournals.org/content/57/5/1085.long
    総説論文
    *Kiba, T. and *Krapp, A. (2016) Plant nitrogen acquisition under low availability: regulation of uptake and root architecture. Plant Cell Physiol., 57, 707-714.
    https://academic.oup.com/pcp/article/57/4/707/2461115
    日本語著書・解説
    榊原均、木羽隆敏(2016)C4モデル植物Staria viridisの研究ツールの整備、植物科学の最前線、BSJ Review 7, 42-46.
    木羽隆敏、榊原均(2016)サイトカイニンの生合成と輸送、植物の生長調節 51, 24-29.

木村班

  • -2018年-
    原著論文
    Tsujimura, M., Kaneko, T., Sakamoto, T., Kimura, S., Shigyo, M., Yamagishi, H., and Terachi, T.(2018) Multichromosomal structure of the onion mitochondrial genome and a transcript analysis. Mitochondrion, in press.
    https://www.sciencedirect.com/science/article/pii/S1567724918300916
    Yoshiyama, K. O. and *Kimura, S. (2018) Ser-Gln sites of SOG1 are rapidly hyperphosphorylated in response to DNA double-strand breaks. Plant Signal. Behav., e1477904.
    https://www.tandfonline.com/doi/full/10.1080/15592324.2018.1477904
    Nakayama, H., Sakamoto, T., Okegawa, Y., Kaminoyama, K., Fujie, M., Ichihashi, Y., Kurata, T., Motohashi, K., Al-Shehbaz, I., Sinha, N., and *Kimura, S. (2018) Comparative transcriptomics with self-organizing map reveals cryptic photosynthetic differences between two accessions in North American Lake cress. Sci. Rep., 8, 3302.
    https://www.nature.com/articles/s41598-018-21646-w
    #Uchida, N., #Takahashi, K., Iwasaki, R., Yamada, R., Yoshimura, M., Endo, T. A., Kimura, S., Zhang, H., Nomoto, M., Tada, Y., Kinoshita, T., Itami, K., *Hagihara, S., and *Torii, K. U. (2018) Chemical hijacking of auxin signaling with an engineered auxin-TIR1 pair. Nature Chem. Biol., 14, 299-305.
    https://www.nature.com/articles/nchembio.2555
    新聞ネット記事・テレビ報道
    京都新聞(2018年2月21日)夕刊 植物のDNA修復解明
  • -2016年-
    日本語著書・解説
    坂本智昭、*木村成介(2016)Rorippa aquatica遺伝子情報データベースの構築、京都産業大学総合学術研究所報 11, 105-113.
    天野瑠美、坂本智昭、*木村成介(2016)アブラナ科植物Rorippa aquaticaにみられる葉断面からの栄養繁殖条件の検討、京都産業大学総合学術研究所報 11, 115-121.

西條班

清水班

  • -2018年-
    原著論文
    *#Song, Y. H., #Kubota, A., Kwon, M. S., Covington, M. F., Lee, N., Taagen, E. R., Cintron, D. L., Hwang, D. Y., Akiyama, R., Hodge, S. K., Huang, H., Nguyen, N. H., Nusinow, D. A., Millar, A. J., Shimizu, K. K., and *Imaizumi, T. (2018) Molecular basis of flowering under natural long-day conditions in Arabidopsis. Nature Plants, 4, 824-835.
    https://www.nature.com/articles/s41477-018-0253-3
    プレスリリース
    野外環境における植物の開花メカニズムを解明~作物のより正確な開花・収穫時期の制御へ前進~(2018年9月25日)
    https://www.yokohama-cu.ac.jp/news/2018/201809shimizu_np.html

寿崎班

  • -2016年-
    原著論文
    Nishida, H., Handa, Y., Tanaka, S., *Suzaki, T. and *Kawaguchi, M. (2016) Expression of the CLE-RS3 gene suppresses root nodulation in Lotus japonicus. J. Plant Res., 129, 909-919.
    http://link.springer.com/article/10.1007%2Fs10265-016-0842-z
    Pfeiffer, A., Janocha, D., Dong, Y., Medzihradszky, A., Schöne, S., Daum, G.,Suzaki, T., Forner, J., Langenecker, T., Rempel, E., Schmid, M., Wirtz, M., Hell, R., and *Lohmann, J.U. (2016) Integration of light and metabolic signals for stem cell activation at the shoot apical meristem. eLife, 5, e17023 (21 pages).
    https://elifesciences.org/content/5/e17023
    日本語著書・解説
    寿崎拓哉、西田帆那 (2016) 根粒形成における負の制御系、BSJ Review 7E, 230-240.

関班

  • -2018年-
    原著論文
    Ueda, M., Matsui, A., Nakamura, T., Abe, T., Sunaoshi, Y., Shimada, H., and *Seki, M. (2018) Versatility of HDA19-deficiency in increasing the tolerance of Arabidopsis to different environmental stresses. Plant Signal. Behav., in press.
    https://doi.org/10.1080/15592324.2018.1475808
    Nakaminami, K., Okamoto, M., Higuchi-Takeuchi, M., Yoshizumi, T., Yamaguchi, Y., Fukao, Y., Shimizu, M., Ohashi, C., Tanaka, M., Matsui, M., Shinozaki, K., *Seki, M., and *Hanada, K.(2018) AtPep3 is a hormone-like peptide that plays a role in salinity stress tolerance of plants. Proc. Natl. Acad. Sci. U.S.A., 115, 5810-5815. [プレスリリース]
    http://www.pnas.org/content/115/22/5810
    #Rasheed, S., #Bashir, K., Kim, J. M., Ando, M., Tanaka, M., and *Seki, M. (2018) The modulation of acetic acid pathway genes in Arabidopsis improves survival under drought stress. Sci. Rep., 8, 7831 (15 pages).
    https://www.nature.com/articles/s41598-018-26103-2
    Nguyen, H. M., Sako, K., Matsui, A., Ueda, M., Tanaka, M., Ito, A., Nishino, N., Yoshida, M., and *Seki, M. (2018) Transcriptomic analysis of Arabidopsis thaliana plants treated with the Ky-9 and Ky-72 histone deacetylase inhibitors. Plant Signal. Behav., 13, e1448333 .
    https://www.tandfonline.com/doi/abs/10.1080/15592324.2018.1448333
    英語著書
    Ueda, M., Sako, K., and *Seki, M. (2018) Epigenetic regulations and modifications for enhanced salinity stress tolerance in plants. In "Salinity Responses and Tolerance in Plants, Volume 2: Exploring RNAi, Genome Editing and Systems Biology" edited by Kumar, V., Wani, S. H., Suprasanna, P., and Tran, L.-S. P. Springer, in press.
    *Nakaminami, K., and Seki, M. (2018) RNA regulation in plant cold stress response. In "Survival Strategies in Extreme Cold and Desiccation: Adaptation Mechanisms and their Application" edited by Drs. Iwaya-Inoue, M., Uemura, M. and Sakurai, M. Springer Japan, in press.
    Matsui, A. and *Seki, M. (2018) Analysis of lncRNAs in plant abiotic stress responses. In "Methods in Molecular Biology - Plant lncRNAs -" edited by Drs. Chekanova, J. and Wang, H. L. Springer, in press.
    Bashir, K., Rasheed, S., Matsui, A., Iida, K., Tanaka, M., and *Seki, M. (2018) Monitoring transcriptomic changes in soil-grown roots and shoots of Arabidopsis thaliana subjected to a progressive drought stress, In "Methods in Molecular Biology - Root Development" edited by Barbez, E. and Ristova, D. Humana Press, 1761, 223-230.
    プレスリリース
    塩耐性を強化する植物ペプチドの発見 -人工合成のペプチド添加で塩耐性を強化することに成功-(2018年5月17日)
    http://www.riken.jp/pr/press/2018/20180517_1/

高野班

高橋班

  • -2018年-
    原著論文
    *Takahashi, F., Suzuki, T., Osakabe, Y., Betsuyaku, S., Kondo, Y., Dohmae, N., Fukuda, H., Yamaguchi-Shinozaki, K., and *Shinozaki, K. (2018) A small peptide modulates stomatal control via abscisic acid in long-distance signaling. Nature, 556, 235-238. [プレスリリース]
    [新聞ネット記事]
    https://www.nature.com/articles/s41586-018-0009-2
    英語著書
    Takahashi, F., Kuromori, T., Sato, H., and *Shinozaki, K. (2018) Regulatory gene networks in drought stress responses and resistance in plants. In "Survival strategies in extreme cold and desiccation: Adaptation mechanisms and their application" edited by Iwaya-Inoue, M., Sakurai, M., and Uemura, M. Springer, Chapter 12, in press.
    プレスリリース
    乾燥に強くなる植物ペプチドを発見 -植物の乾燥ストレス応答を紐解く新展開-(2018年4月5日)
    http://www.riken.jp/pr/press/2018/20180405_1/
    新聞ネット記事・テレビ報道
    日本経済新聞(2018年4月5日)乾燥防ぐたんぱく質発見 理研、農作物開発に応用も
    日経産業新聞(2018年4月5日)乾燥防ぐ新たんぱく 理研 植物の根で作り葉に効果
    日刊工業新聞(2018年4月5日)理研、耐性ペプチド発見 植物の乾燥ストレス 品種改良など期待
    化学工業新聞(2018年4月5日)環境ストレス伝達情報伝達 植物の移動性ペプチドホルモン
    徳島新聞(2018年4月5日)植物の根 水分不足を検知 葉に知らせる仕組み解明 乾燥耐性作物開発に期待
  • -2017年-
    原著論文
    #Morimoto, K., #Ohama. N., Kidokoro, S., Mizoi, J., Takahashi, F., Todaka, D., Mogami, J., Sato, H., Qin, F., Kim, J. S., Fukao, Y., Fujiwara, M., Shinozaki, K., and *Shinozaki, K. Y. (2017) BPM-CUL3 E3 ligase modulates thermotolerance by facilitating negative regulatory domain-mediated degradation of DREB2A in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 114, E8528-E8536.
    http://www.pnas.org/content/114/40/E8528.full
    Kidokoro, S., Yoneda, K., Takasaki, H., Takahashi, F., Shinozaki, K., and *Shinozaki, K. Y. (2017) Different cold-signaling pathways function in the responses to rapid and gradual decreases in temperature. Plant Cell, 29, 760-774.
    http://www.plantcell.org/content/29/4/760
    #Soma, F., #Mogami, J., Yoshida, T., Abekura, M., Takahashi, F., Kidokoro, S., Mizoi, J., Shinozaki, K., and *Shinozaki, K. Y. (2017) ABA-unresponsive SnRK2 protein kinases regulate mRNA decay under osmotic stress in plants. Nature Plants, 3, 16204.
    https://www.nature.com/articles/nplants2016204
  • -2016年-
    原著論文
    Ohama, N., Kusakabe, K., Mizoi, J., Zhao, H., Kidokoro, S., Koizumi, S., Takahashi, F., Ishida, T., Yanagisawa, S., Shinozaki, K., and *Shinozaki, K. Y. (2016) The transcriptional cascade in the heat stress response of Arabidopsis is strictly regulated at the level of transcription factor expression. Plant Cell, 28, 181-201.
    http://www.plantcell.org/content/28/1/181

竹澤班

  • -2018年-
    原著論文
    Amagai, A., Honda, Y., Ishikawa, S., Hara, Y., Kuwamura, M., Shinozawa, A., Sugiyama, N., Ishihama, Y., Takezawa, D., Sakata, Y., Shinozaki, K., and *Umezawa, T. (2018) Phosphoproteomic profiling reveals ABA-responsive phosphosignaling pathways in Physcomitrella patens. Plant J., 94, 699-708.
    https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.13891
    英語著書
    *Takezawa, D. (2018)Mechanisms underlying freezing and desiccation tolerance in bryophytes. In "Survival strategies in extreme cold and desiccation: Adaptation mechanisms and their application" edited by Iwaya-Inoue, M., Sakurai, M., and Uemura, M. Springer, Chapter 10, in press.
  • -2016年-
    原著論文
    Ghosh, T. K., Kaneko, M., Akter, K., Murai, S., Komatsu, K., Ishizaki, K., Yamato, T. K., Kohchi, T. and *Takezawa, D. (2016) Abscisic acid-induced gene expression in the liverwort Marchantia polymorpha is mediated by evolutionarily conserved promoter elements. Physiol. Plant., 156, 407-420.
    https://onlinelibrary.wiley.com/doi/10.1111/ppl.12385

豊田班

野田口班

藤井班

  • -2016年-
    原著論文
    Kubo, K., Tsukahara, M., Fujii, S., Murasem K., Wada, Y., Entani, T., Iwano, M., and *Takayama, S. (2016) Cullin1-P is an essential component of non-self recognition system in self-incompatibility in Petunia. Plant Cell Physiol., 57, 2403-2416.
    http://pcp.oxfordjournals.org/content/early/2016/08/26/pcp.pcw152.long
    *Fujii, S., *Suzuki, T., Giegé, P., Higashiyama, T., Koizuka, N., and Shikanai, T. (2016) The Restorer-of-fertility-like 2 pentatricopeptide repeat protein and RNase P are required for the processing of mitochondrial orf291 RNA in Arabidopsis. Plant J., 86, 504-513.
    https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.13185
    総説論文
    Fujii, S., Kubo, K., and *Takayama, S. (2016) Non-self- and self-recognition models in plant self-incompatibility. Nature Plants, 2, 16130.
    http://www.nature.com/articles/nplants2016130

松下班

山口班